| Position | A | C | G | T |
|---|---|---|---|---|
| 1 | 0.152 | 0.496 | 0.246 | 0.106 |
| 2 | 0.03 | 0.731 | 0.012 | 0.227 |
| 3 | 0.916 | 0.043 | 0.018 | 0.023 |
| 4 | 0.992 | 0.008 | 0.0 | 0.0 |
| 5 | 0.0 | 0.0 | 0.0 | 1.0 |
| 6 | 0.014 | 0.046 | 0.019 | 0.921 |
| 7 | 0.976 | 0.018 | 0.0 | 0.006 |
| 8 | 0.352 | 0.233 | 0.262 | 0.152 |
| MSX2 | MSX1 | Msx3 | LBX2 | Shox2 | RAX2 | ISX | GBX2 | Dlx3 | Dlx4 | |
|---|---|---|---|---|---|---|---|---|---|---|
| MSX2 | 100 | 99 | 98 | 97 | 97 | 97 | 97 | 97 | 97 | 97 |
| MSX1 | 99 | 100 | 98 | 98 | 98 | 98 | 98 | 20 | 98 | 98 |
| Msx3 | 98 | 98 | 100 | 97 | 98 | 97 | 98 | 99 | 98 | 98 |
| LBX2 | 97 | 98 | 97 | 100 | 99 | 99 | 99 | 98 | 79 | 79 |
| Shox2 | 97 | 98 | 98 | 99 | 100 | 99 | 99 | 98 | 97 | 97 |
| RAX2 | 97 | 98 | 97 | 99 | 99 | 100 | 99 | 98 | 98 | 98 |
| ISX | 97 | 98 | 98 | 99 | 99 | 99 | 100 | 98 | 97 | 97 |
| GBX2 | 97 | 20 | 99 | 98 | 98 | 98 | 98 | 100 | 21 | 20 |
| Dlx3 | 97 | 98 | 98 | 79 | 97 | 98 | 97 | 21 | 100 | 99 |
| Dlx4 | 97 | 98 | 98 | 79 | 97 | 98 | 97 | 20 | 99 | 100 |