| Position | A | C | G | T |
|---|---|---|---|---|
| 1 | 0.165 | 0.387 | 0.298 | 0.15 |
| 2 | 0.036 | 0.665 | 0.003 | 0.296 |
| 3 | 0.945 | 0.018 | 0.027 | 0.011 |
| 4 | 0.984 | 0.01 | 0.004 | 0.001 |
| 5 | 0.0 | 0.0 | 0.0 | 1.0 |
| 6 | 0.014 | 0.024 | 0.012 | 0.95 |
| 7 | 0.959 | 0.007 | 0.01 | 0.024 |
| 8 | 0.321 | 0.207 | 0.31 | 0.162 |
| Msx3 | GBX2 | Dlx2 | MSX1 | Dlx4 | Dlx3 | Prrx2 | DLX6 | RAX | MSX2 | |
|---|---|---|---|---|---|---|---|---|---|---|
| Msx3 | 100 | 99 | 99 | 98 | 98 | 98 | 98 | 98 | 98 | 98 |
| GBX2 | 99 | 100 | 21 | 20 | 20 | 21 | 98 | 21 | 99 | 97 |
| Dlx2 | 99 | 21 | 100 | 98 | 99 | 99 | 99 | 99 | 25 | 97 |
| MSX1 | 98 | 20 | 98 | 100 | 98 | 98 | 98 | 97 | 24 | 99 |
| Dlx4 | 98 | 20 | 99 | 98 | 100 | 99 | 99 | 99 | 25 | 97 |
| Dlx3 | 98 | 21 | 99 | 98 | 99 | 100 | 99 | 99 | 25 | 97 |
| Prrx2 | 98 | 98 | 99 | 98 | 99 | 99 | 100 | 99 | 98 | 97 |
| DLX6 | 98 | 21 | 99 | 97 | 99 | 99 | 99 | 100 | 24 | 97 |
| RAX | 98 | 99 | 25 | 24 | 25 | 25 | 98 | 24 | 100 | 25 |
| MSX2 | 98 | 97 | 97 | 99 | 97 | 97 | 97 | 97 | 25 | 100 |