| Position | A | C | G | T |
|---|---|---|---|---|
| 1 | 0.15 | 0.431 | 0.256 | 0.163 |
| 2 | 0.026 | 0.664 | 0.01 | 0.3 |
| 3 | 0.863 | 0.093 | 0.039 | 0.004 |
| 4 | 0.966 | 0.034 | 0.0 | 0.0 |
| 5 | 0.0 | 0.0 | 0.01 | 0.99 |
| 6 | 0.018 | 0.057 | 0.07 | 0.856 |
| 7 | 0.907 | 0.035 | 0.031 | 0.027 |
| 8 | 0.278 | 0.265 | 0.307 | 0.15 |
| MSX1 | MSX2 | Msx3 | LBX2 | RAX2 | Shox2 | Dlx4 | Dlx3 | Dlx2 | ISX | |
|---|---|---|---|---|---|---|---|---|---|---|
| MSX1 | 100 | 99 | 98 | 98 | 98 | 98 | 98 | 98 | 98 | 98 |
| MSX2 | 99 | 100 | 98 | 97 | 97 | 97 | 97 | 97 | 97 | 97 |
| Msx3 | 98 | 98 | 100 | 97 | 97 | 98 | 98 | 98 | 99 | 98 |
| LBX2 | 98 | 97 | 97 | 100 | 99 | 99 | 79 | 79 | 81 | 99 |
| RAX2 | 98 | 97 | 97 | 99 | 100 | 99 | 98 | 98 | 98 | 99 |
| Shox2 | 98 | 97 | 98 | 99 | 99 | 100 | 97 | 97 | 98 | 99 |
| Dlx4 | 98 | 97 | 98 | 79 | 98 | 97 | 100 | 99 | 99 | 97 |
| Dlx3 | 98 | 97 | 98 | 79 | 98 | 97 | 99 | 100 | 99 | 97 |
| Dlx2 | 98 | 97 | 99 | 81 | 98 | 98 | 99 | 99 | 100 | 98 |
| ISX | 98 | 97 | 98 | 99 | 99 | 99 | 97 | 97 | 98 | 100 |