| Position | A | C | G | T |
|---|---|---|---|---|
| 1 | 0.145 | 0.239 | 0.515 | 0.101 |
| 2 | 0.023 | 0.812 | 0.018 | 0.147 |
| 3 | 0.912 | 0.026 | 0.022 | 0.04 |
| 4 | 0.338 | 0.602 | 0.018 | 0.043 |
| 5 | 0.035 | 0.021 | 0.027 | 0.916 |
| 6 | 0.042 | 0.108 | 0.002 | 0.848 |
| 7 | 0.777 | 0.028 | 0.008 | 0.187 |
| 8 | 0.484 | 0.106 | 0.28 | 0.13 |
| ISL2 | NKX3-2 | Nkx3-1 | NKX2-8 | NKX2-3 | Nkx2-5 | MSX2 | Msx3 | MSX1 | Dlx4 | |
|---|---|---|---|---|---|---|---|---|---|---|
| ISL2 | 100 | 94 | 92 | 91 | 90 | 88 | 85 | 84 | 84 | 82 |
| NKX3-2 | 94 | 100 | 98 | 95 | 96 | 84 | 74 | 72 | 72 | 69 |
| Nkx3-1 | 92 | 98 | 100 | 94 | 96 | -17 | 73 | 70 | 71 | 68 |
| NKX2-8 | 91 | 95 | 94 | 100 | 97 | 0 | 41 | 45 | 42 | 41 |
| NKX2-3 | 90 | 96 | 96 | 97 | 100 | 3 | 39 | 44 | 41 | 39 |
| Nkx2-5 | 88 | 84 | -17 | 0 | 3 | 100 | 87 | 88 | 86 | 87 |
| MSX2 | 85 | 74 | 73 | 41 | 39 | 87 | 100 | 98 | 99 | 97 |
| Msx3 | 84 | 72 | 70 | 45 | 44 | 88 | 98 | 100 | 98 | 98 |
| MSX1 | 84 | 72 | 71 | 42 | 41 | 86 | 99 | 98 | 100 | 98 |
| Dlx4 | 82 | 69 | 68 | 41 | 39 | 87 | 97 | 98 | 98 | 100 |