| Position | A | C | G | T |
|---|---|---|---|---|
| 1 | 0.138 | 0.499 | 0.019 | 0.343 |
| 2 | 0.029 | 0.004 | 0.967 | 0.001 |
| 3 | 0.32 | 0.026 | 0.653 | 0.0 |
| 4 | 0.0 | 1.0 | 0.0 | 0.0 |
| 5 | 0.999 | 0.0 | 0.001 | 0.0 |
| 6 | 0.001 | 0.999 | 0.0 | 0.001 |
| 7 | 0.001 | 0.0 | 0.999 | 0.0 |
| 8 | 0.0 | 0.004 | 0.0 | 0.996 |
| 9 | 0.0 | 0.0 | 1.0 | 0.0 |
| 10 | 0.0 | 0.847 | 0.008 | 0.145 |
| 11 | 0.0 | 0.99 | 0.001 | 0.009 |
| 12 | 0.418 | 0.098 | 0.305 | 0.179 |
| HES5 | HES7 | HEY2 | HEY1 | Hes2 | BHLHE40 | MNT | MAX | Npas2 | BHLHE41 | |
|---|---|---|---|---|---|---|---|---|---|---|
| HES5 | 100 | 98 | 94 | 93 | 86 | 84 | 83 | 80 | 80 | 80 |
| HES7 | 98 | 100 | 90 | 90 | 83 | 82 | 80 | 77 | 77 | 77 |
| HEY2 | 94 | 90 | 100 | 98 | 93 | 90 | 91 | 90 | 91 | 85 |
| HEY1 | 93 | 90 | 98 | 100 | 92 | 92 | 94 | 93 | 94 | 85 |
| Hes2 | 86 | 83 | 93 | 92 | 100 | 87 | 88 | 86 | 90 | 80 |
| BHLHE40 | 84 | 82 | 90 | 92 | 87 | 100 | 94 | 92 | 91 | 95 |
| MNT | 83 | 80 | 91 | 94 | 88 | 94 | 100 | 99 | 96 | 86 |
| MAX | 80 | 77 | 90 | 93 | 86 | 92 | 99 | 100 | 95 | 85 |
| Npas2 | 80 | 77 | 91 | 94 | 90 | 91 | 96 | 95 | 100 | 84 |
| BHLHE41 | 80 | 77 | 85 | 85 | 80 | 95 | 86 | 85 | 84 | 100 |