| Position | A | C | G | T |
|---|---|---|---|---|
| 1 | 0.214 | 0.214 | 0.214 | 0.357 |
| 2 | 0.341 | 0.197 | 0.197 | 0.264 |
| 3 | 0.341 | 0.197 | 0.197 | 0.264 |
| 4 | 0.245 | 0.333 | 0.245 | 0.177 |
| 5 | 0.083 | 0.152 | 0.682 | 0.083 |
| 6 | 0.603 | 0.0 | 0.397 | 0.0 |
| 7 | 0.282 | 0.718 | 0.0 | 0.0 |
| 8 | 0.93 | 0.0 | 0.07 | 0.0 |
| 9 | 0.174 | 0.754 | 0.036 | 0.036 |
| 10 | 0.123 | 0.053 | 0.771 | 0.053 |
| 11 | 0.053 | 0.053 | 0.053 | 0.841 |
| 12 | 0.143 | 0.073 | 0.711 | 0.073 |
| 13 | 0.238 | 0.428 | 0.167 | 0.167 |
| Hes2 | HEY2 | HEY1 | HEYL | Npas2 | Mlxip | Arnt | MNT | Id2 | ID1 | |
|---|---|---|---|---|---|---|---|---|---|---|
| Hes2 | 100 | 93 | 92 | 92 | 90 | 89 | 88 | 88 | 87 | 87 |
| HEY2 | 93 | 100 | 98 | 97 | 91 | 90 | 22 | 91 | 90 | 88 |
| HEY1 | 92 | 98 | 100 | 96 | 94 | 94 | 23 | 94 | 92 | 92 |
| HEYL | 92 | 97 | 96 | 100 | 95 | 95 | 94 | 94 | 95 | 95 |
| Npas2 | 90 | 91 | 94 | 95 | 100 | 98 | 96 | 96 | 96 | 96 |
| Mlxip | 89 | 90 | 94 | 95 | 98 | 100 | 97 | 97 | 96 | 96 |
| Arnt | 88 | 22 | 23 | 94 | 96 | 97 | 100 | 18 | 96 | 96 |
| MNT | 88 | 91 | 94 | 94 | 96 | 97 | 18 | 100 | 96 | 96 |
| Id2 | 87 | 90 | 92 | 95 | 96 | 96 | 96 | 96 | 100 | 100 |
| ID1 | 87 | 88 | 92 | 95 | 96 | 96 | 96 | 96 | 100 | 100 |