| Position | A | C | G | T |
|---|---|---|---|---|
| 1 | 0.341 | 0.27 | 0.261 | 0.129 |
| 2 | 0.106 | 0.037 | 0.382 | 0.475 |
| 3 | 0.005 | 0.994 | 0.0 | 0.001 |
| 4 | 0.975 | 0.011 | 0.007 | 0.007 |
| 5 | 0.002 | 0.995 | 0.0 | 0.003 |
| 6 | 0.006 | 0.003 | 0.992 | 0.0 |
| 7 | 0.014 | 0.021 | 0.007 | 0.957 |
| 8 | 0.0 | 0.001 | 0.992 | 0.006 |
| 9 | 0.5 | 0.447 | 0.011 | 0.042 |
| 10 | 0.138 | 0.508 | 0.123 | 0.231 |
| BHLHE40 | Arntl | ARNTL2 | TFE3 | Id2 | MLXIPL | BHLHE41 | MNT | Arnt | TFEB | |
|---|---|---|---|---|---|---|---|---|---|---|
| BHLHE40 | 100 | 96 | 96 | 96 | 95 | 95 | 95 | 94 | 94 | 94 |
| Arntl | 96 | 100 | 100 | 97 | 95 | 95 | 95 | 93 | 92 | 96 |
| ARNTL2 | 96 | 100 | 100 | 97 | 95 | 95 | 95 | 93 | 93 | 96 |
| TFE3 | 96 | 97 | 97 | 100 | 92 | 96 | 95 | 93 | 18 | 98 |
| Id2 | 95 | 95 | 95 | 92 | 100 | 92 | 92 | 96 | 96 | 89 |
| MLXIPL | 95 | 95 | 95 | 96 | 92 | 100 | 94 | 93 | 13 | 96 |
| BHLHE41 | 95 | 95 | 95 | 95 | 92 | 94 | 100 | 86 | 9 | 96 |
| MNT | 94 | 93 | 93 | 93 | 96 | 93 | 86 | 100 | 18 | 90 |
| Arnt | 94 | 92 | 93 | 18 | 96 | 13 | 9 | 18 | 100 | 14 |
| TFEB | 94 | 96 | 96 | 98 | 89 | 96 | 96 | 90 | 14 | 100 |