| Position | A | C | G | T |
|---|---|---|---|---|
| 1 | 0.158 | 0.584 | 0.149 | 0.109 |
| 2 | 0.1 | 0.24 | 0.56 | 0.1 |
| 3 | 0.19 | 0.44 | 0.16 | 0.21 |
| 4 | 0.4 | 0.15 | 0.29 | 0.16 |
| 5 | 0.02 | 0.343 | 0.01 | 0.626 |
| 6 | 0.01 | 0.079 | 0.0 | 0.911 |
| 7 | 0.98 | 0.01 | 0.01 | 0.0 |
| 8 | 0.98 | 0.0 | 0.01 | 0.01 |
| 9 | 0.01 | 0.01 | 0.0 | 0.98 |
| 10 | 0.0 | 0.01 | 0.01 | 0.98 |
| 11 | 0.911 | 0.0 | 0.079 | 0.01 |
| 12 | 0.626 | 0.01 | 0.343 | 0.02 |
| 13 | 0.17 | 0.23 | 0.18 | 0.42 |
| 14 | 0.29 | 0.28 | 0.13 | 0.3 |
| 15 | 0.36 | 0.23 | 0.19 | 0.22 |
| 16 | 0.23 | 0.29 | 0.25 | 0.23 |
| 17 | 0.12 | 0.43 | 0.21 | 0.24 |
| Alx4 | Alx1 | Arx | Lhx3 | Hoxd3 | Hoxb5 | Hoxd8 | PHOX2A | Phox2b | POU4F3 | |
|---|---|---|---|---|---|---|---|---|---|---|
| Alx4 | 100 | 98 | 90 | 82 | 81 | 79 | 78 | 69 | 67 | 67 |
| Alx1 | 98 | 100 | 90 | 75 | 82 | 81 | 78 | 68 | 66 | 66 |
| Arx | 90 | 90 | 100 | 83 | 84 | 81 | 82 | 70 | 69 | 60 |
| Lhx3 | 82 | 75 | 83 | 100 | 73 | 65 | 71 | -2 | -4 | 50 |
| Hoxd3 | 81 | 82 | 84 | 73 | 100 | 95 | 66 | 24 | 21 | 35 |
| Hoxb5 | 79 | 81 | 81 | 65 | 95 | 100 | 23 | 71 | 70 | 31 |
| Hoxd8 | 78 | 78 | 82 | 71 | 66 | 23 | 100 | -2 | -3 | 49 |
| PHOX2A | 69 | 68 | 70 | -2 | 24 | 71 | -2 | 100 | 99 | 37 |
| Phox2b | 67 | 66 | 69 | -4 | 21 | 70 | -3 | 99 | 100 | 46 |
| POU4F3 | 67 | 66 | 60 | 50 | 35 | 31 | 49 | 37 | 46 | 100 |