| Position | A | C | G | T | 
|---|---|---|---|---|
| 1 | 0.45 | 0.0 | 0.15 | 0.4 | 
| 2 | 0.8 | 0.1 | 0.1 | 0.0 | 
| 3 | 0.95 | 0.0 | 0.0 | 0.05 | 
| 4 | 0.0 | 0.0 | 0.0 | 1.0 | 
| 5 | 0.0 | 0.0 | 0.0 | 1.0 | 
| 6 | 0.95 | 0.0 | 0.0 | 0.05 | 
| 7 | 1.0 | 0.0 | 0.0 | 0.0 | 
| 8 | 0.1 | 0.1 | 0.0 | 0.8 | 
| 9 | 0.0 | 0.05 | 0.0 | 0.95 | 
| 10 | 0.8 | 0.05 | 0.0 | 0.15 | 
| 11 | 0.45 | 0.0 | 0.15 | 0.4 | 
| 12 | 0.1 | 0.4 | 0.0 | 0.5 | 
| 13 | 0.1 | 0.45 | 0.15 | 0.3 | 
| Lhx3 | Arx | POU6F1 | mix-a | Alx4 | LHX6 | Alx1 | ZFHX2 | LHX1 | LHX5 | |
|---|---|---|---|---|---|---|---|---|---|---|
| Lhx3 | 100 | 83 | 83 | 82 | 82 | 76 | 75 | 74 | 74 | 74 | 
| Arx | 83 | 100 | 24 | 40 | 90 | 20 | 90 | 21 | -22 | -22 | 
| POU6F1 | 83 | 24 | 100 | 95 | 50 | 97 | 51 | 93 | 21 | 21 | 
| mix-a | 82 | 40 | 95 | 100 | 51 | 94 | 51 | 94 | 27 | 27 | 
| Alx4 | 82 | 90 | 50 | 51 | 100 | 46 | 98 | 41 | 23 | 23 | 
| LHX6 | 76 | 20 | 97 | 94 | 46 | 100 | 47 | 94 | 89 | 89 | 
| Alx1 | 75 | 90 | 51 | 51 | 98 | 47 | 100 | 41 | 25 | 25 | 
| ZFHX2 | 74 | 21 | 93 | 94 | 41 | 94 | 41 | 100 | 19 | 19 | 
| LHX1 | 74 | -22 | 21 | 27 | 23 | 89 | 25 | 19 | 100 | 100 | 
| LHX5 | 74 | -22 | 21 | 27 | 23 | 89 | 25 | 19 | 100 | 100 |