| Position | A | C | G | T |
|---|---|---|---|---|
| 1 | 0.52 | 0.23 | 0.14 | 0.11 |
| 2 | 0.27 | 0.35 | 0.19 | 0.19 |
| 3 | 0.168 | 0.089 | 0.644 | 0.099 |
| 4 | 0.12 | 0.15 | 0.38 | 0.35 |
| 5 | 0.01 | 0.07 | 0.0 | 0.92 |
| 6 | 0.909 | 0.091 | 0.0 | 0.0 |
| 7 | 0.98 | 0.01 | 0.0 | 0.01 |
| 8 | 0.01 | 0.0 | 0.01 | 0.98 |
| 9 | 0.0 | 0.0 | 0.091 | 0.909 |
| 10 | 0.92 | 0.0 | 0.07 | 0.01 |
| 11 | 0.19 | 0.29 | 0.41 | 0.11 |
| 12 | 0.099 | 0.644 | 0.089 | 0.168 |
| 13 | 0.283 | 0.253 | 0.101 | 0.364 |
| 14 | 0.28 | 0.44 | 0.11 | 0.17 |
| 15 | 0.673 | 0.05 | 0.139 | 0.139 |
| 16 | 0.22 | 0.16 | 0.14 | 0.48 |
| Hoxb5 | Hoxd3 | LHX1 | LHX5 | Arx | Alx1 | Alx4 | PHOX2A | Phox2b | POU3F3 | |
|---|---|---|---|---|---|---|---|---|---|---|
| Hoxb5 | 100 | 95 | 82 | 82 | 81 | 81 | 79 | 71 | 70 | 68 |
| Hoxd3 | 95 | 100 | 86 | 86 | 84 | 82 | 81 | 24 | 21 | 10 |
| LHX1 | 82 | 86 | 100 | 100 | -22 | 25 | 23 | -3 | -5 | 14 |
| LHX5 | 82 | 86 | 100 | 100 | -22 | 25 | 23 | -3 | -5 | 14 |
| Arx | 81 | 84 | -22 | -22 | 100 | 90 | 90 | 70 | 69 | 25 |
| Alx1 | 81 | 82 | 25 | 25 | 90 | 100 | 98 | 68 | 66 | 20 |
| Alx4 | 79 | 81 | 23 | 23 | 90 | 98 | 100 | 69 | 67 | 20 |
| PHOX2A | 71 | 24 | -3 | -3 | 70 | 68 | 69 | 100 | 99 | 59 |
| Phox2b | 70 | 21 | -5 | -5 | 69 | 66 | 67 | 99 | 100 | 59 |
| POU3F3 | 68 | 10 | 14 | 14 | 25 | 20 | 20 | 59 | 59 | 100 |