| Position | A | C | G | T |
|---|---|---|---|---|
| 1 | 0.245 | 0.215 | 0.305 | 0.235 |
| 2 | 0.25 | 0.217 | 0.392 | 0.14 |
| 3 | 0.103 | 0.395 | 0.074 | 0.428 |
| 4 | 0.446 | 0.327 | 0.076 | 0.151 |
| 5 | 0.743 | 0.064 | 0.178 | 0.015 |
| 6 | 0.1 | 0.043 | 0.023 | 0.833 |
| 7 | 0.477 | 0.153 | 0.038 | 0.333 |
| 8 | 0.585 | 0.092 | 0.111 | 0.211 |
| 9 | 0.522 | 0.146 | 0.163 | 0.168 |
| CDX4 | HOXA6 | NKX6-3 | NKX6-2 | LMX1B | LHX9 | NKX6-1 | Prrx2 | LMX1A | UNCX | |
|---|---|---|---|---|---|---|---|---|---|---|
| CDX4 | 100 | 92 | 90 | 89 | 89 | 86 | 85 | 85 | 85 | 84 |
| HOXA6 | 92 | 100 | 96 | -2 | 12 | 5 | 0 | 8 | 88 | 8 |
| NKX6-3 | 90 | 96 | 100 | 97 | 92 | 85 | 94 | 83 | 90 | 84 |
| NKX6-2 | 89 | -2 | 97 | 100 | 95 | 95 | 98 | 95 | 93 | 95 |
| LMX1B | 89 | 12 | 92 | 95 | 100 | 96 | 94 | 97 | 97 | 98 |
| LHX9 | 86 | 5 | 85 | 95 | 96 | 100 | 92 | 98 | 94 | 98 |
| NKX6-1 | 85 | 0 | 94 | 98 | 94 | 92 | 100 | 92 | 94 | 93 |
| Prrx2 | 85 | 8 | 83 | 95 | 97 | 98 | 92 | 100 | 94 | 99 |
| LMX1A | 85 | 88 | 90 | 93 | 97 | 94 | 94 | 94 | 100 | 95 |
| UNCX | 84 | 8 | 84 | 95 | 98 | 98 | 93 | 99 | 95 | 100 |