| Position | A | C | G | T |
|---|---|---|---|---|
| 1 | 0.189 | 0.379 | 0.199 | 0.233 |
| 2 | 0.077 | 0.48 | 0.0 | 0.443 |
| 3 | 0.741 | 0.143 | 0.046 | 0.07 |
| 4 | 1.0 | 0.0 | 0.0 | 0.0 |
| 5 | 0.0 | 0.0 | 0.0 | 1.0 |
| 6 | 0.035 | 0.065 | 0.15 | 0.749 |
| 7 | 0.876 | 0.016 | 0.066 | 0.042 |
| 8 | 0.372 | 0.147 | 0.353 | 0.127 |
| LHX9 | UNCX | Prrx2 | PRRX1 | RAX2 | GBX2 | Shox2 | Dlx2 | Dlx3 | ISX | |
|---|---|---|---|---|---|---|---|---|---|---|
| LHX9 | 100 | 98 | 98 | 98 | 98 | 98 | 98 | 98 | 97 | 97 |
| UNCX | 98 | 100 | 99 | 99 | 99 | 98 | 98 | 98 | 98 | 98 |
| Prrx2 | 98 | 99 | 100 | 99 | 98 | 98 | 98 | 99 | 99 | 98 |
| PRRX1 | 98 | 99 | 99 | 100 | 98 | 98 | 99 | 99 | 98 | 98 |
| RAX2 | 98 | 99 | 98 | 98 | 100 | 98 | 99 | 98 | 98 | 99 |
| GBX2 | 98 | 98 | 98 | 98 | 98 | 100 | 98 | 21 | 21 | 98 |
| Shox2 | 98 | 98 | 98 | 99 | 99 | 98 | 100 | 98 | 97 | 99 |
| Dlx2 | 98 | 98 | 99 | 99 | 98 | 21 | 98 | 100 | 99 | 98 |
| Dlx3 | 97 | 98 | 99 | 98 | 98 | 21 | 97 | 99 | 100 | 97 |
| ISX | 97 | 98 | 98 | 98 | 99 | 98 | 99 | 98 | 97 | 100 |