| Position | A | C | G | T |
|---|---|---|---|---|
| 1 | 0.037 | 0.033 | 0.012 | 0.918 |
| 2 | 0.008 | 0.004 | 0.984 | 0.004 |
| 3 | 0.953 | 0.003 | 0.032 | 0.013 |
| 4 | 0.01 | 0.972 | 0.004 | 0.013 |
| 5 | 0.972 | 0.002 | 0.022 | 0.003 |
| 6 | 0.021 | 0.017 | 0.783 | 0.178 |
| 7 | 0.112 | 0.557 | 0.324 | 0.007 |
| 8 | 0.006 | 0.033 | 0.005 | 0.956 |
| 9 | 0.012 | 0.006 | 0.974 | 0.007 |
| 10 | 0.046 | 0.047 | 0.009 | 0.898 |
| 11 | 0.006 | 0.974 | 0.011 | 0.009 |
| 12 | 0.923 | 0.013 | 0.031 | 0.033 |
| TGIF2 | TGIF2LX | TGIF2LY | PKNOX1 | TGIF1 | PKNOX2 | ID3 | MYF6 | ID4 | NEUROD1 | |
|---|---|---|---|---|---|---|---|---|---|---|
| TGIF2 | 100 | 99 | 99 | 99 | 99 | 98 | 71 | 70 | 69 | 69 |
| TGIF2LX | 99 | 100 | 100 | 99 | 99 | 99 | 72 | 70 | 70 | 68 |
| TGIF2LY | 99 | 100 | 100 | 99 | 99 | 99 | 72 | 70 | 70 | 68 |
| PKNOX1 | 99 | 99 | 99 | 100 | 98 | 99 | 74 | 69 | 72 | 69 |
| TGIF1 | 99 | 99 | 99 | 98 | 100 | 97 | 68 | 71 | 67 | 67 |
| PKNOX2 | 98 | 99 | 99 | 99 | 97 | 100 | 76 | 68 | 74 | 69 |
| ID3 | 71 | 72 | 72 | 74 | 68 | 76 | 100 | 72 | 99 | 86 |
| MYF6 | 70 | 70 | 70 | 69 | 71 | 68 | 72 | 100 | 73 | -11 |
| ID4 | 69 | 70 | 70 | 72 | 67 | 74 | 99 | 73 | 100 | 13 |
| NEUROD1 | 69 | 68 | 68 | 69 | 67 | 69 | 86 | -11 | 13 | 100 |