| Position | A | C | G | T |
|---|---|---|---|---|
| 1 | 0.03 | 0.0 | 0.007 | 0.963 |
| 2 | 0.001 | 0.004 | 0.995 | 0.0 |
| 3 | 0.981 | 0.003 | 0.011 | 0.005 |
| 4 | 0.0 | 0.993 | 0.0 | 0.007 |
| 5 | 0.996 | 0.0 | 0.001 | 0.003 |
| 6 | 0.005 | 0.0 | 0.912 | 0.083 |
| 7 | 0.037 | 0.291 | 0.672 | 0.0 |
| 8 | 0.0 | 0.003 | 0.0 | 0.997 |
| 9 | 0.002 | 0.001 | 0.997 | 0.0 |
| 10 | 0.008 | 0.024 | 0.004 | 0.964 |
| 11 | 0.009 | 0.984 | 0.005 | 0.002 |
| 12 | 0.975 | 0.001 | 0.017 | 0.007 |
| PKNOX2 | PKNOX1 | TGIF2LX | TGIF2LY | TGIF2 | TGIF1 | ID3 | ID4 | TCF4 | MESP1 | |
|---|---|---|---|---|---|---|---|---|---|---|
| PKNOX2 | 100 | 99 | 99 | 99 | 98 | 97 | 76 | 74 | 70 | 70 |
| PKNOX1 | 99 | 100 | 99 | 99 | 99 | 98 | 74 | 72 | 68 | 68 |
| TGIF2LX | 99 | 99 | 100 | 100 | 99 | 99 | 72 | 70 | 64 | 66 |
| TGIF2LY | 99 | 99 | 100 | 100 | 99 | 99 | 72 | 70 | 64 | 66 |
| TGIF2 | 98 | 99 | 99 | 99 | 100 | 99 | 71 | 69 | 63 | 65 |
| TGIF1 | 97 | 98 | 99 | 99 | 99 | 100 | 68 | 67 | 61 | 62 |
| ID3 | 76 | 74 | 72 | 72 | 71 | 68 | 100 | 99 | 97 | 96 |
| ID4 | 74 | 72 | 70 | 70 | 69 | 67 | 99 | 100 | 98 | 96 |
| TCF4 | 70 | 68 | 64 | 64 | 63 | 61 | 97 | 98 | 100 | 97 |
| MESP1 | 70 | 68 | 66 | 66 | 65 | 62 | 96 | 96 | 97 | 100 |