| Position | A | C | G | T |
|---|---|---|---|---|
| 1 | 0.071 | 0.638 | 0.09 | 0.201 |
| 2 | 0.107 | 0.055 | 0.222 | 0.616 |
| 3 | 0.985 | 0.006 | 0.0 | 0.009 |
| 4 | 1.0 | 0.0 | 0.0 | 0.0 |
| 5 | 0.0 | 0.0 | 0.015 | 0.985 |
| 6 | 0.048 | 0.03 | 0.027 | 0.895 |
| 7 | 0.748 | 0.2 | 0.025 | 0.027 |
| 8 | 0.243 | 0.151 | 0.54 | 0.066 |
| PAX4 | VSX2 | VSX1 | LHX2 | NOTO | LHX6 | EN1 | Shox2 | GBX1 | ISX | |
|---|---|---|---|---|---|---|---|---|---|---|
| PAX4 | 100 | 96 | 95 | 95 | 94 | 94 | 93 | 93 | 93 | 93 |
| VSX2 | 96 | 100 | 99 | 94 | 96 | 95 | 94 | 95 | 94 | 95 |
| VSX1 | 95 | 99 | 100 | 94 | 92 | 94 | 94 | 94 | 93 | 94 |
| LHX2 | 95 | 94 | 94 | 100 | 97 | 95 | 95 | 95 | 96 | 95 |
| NOTO | 94 | 96 | 92 | 97 | 100 | 94 | 92 | 94 | 93 | 93 |
| LHX6 | 94 | 95 | 94 | 95 | 94 | 100 | 93 | 92 | 92 | 92 |
| EN1 | 93 | 94 | 94 | 95 | 92 | 93 | 100 | 99 | 98 | 98 |
| Shox2 | 93 | 95 | 94 | 95 | 94 | 92 | 99 | 100 | 98 | 99 |
| GBX1 | 93 | 94 | 93 | 96 | 93 | 92 | 98 | 98 | 100 | 98 |
| ISX | 93 | 95 | 94 | 95 | 93 | 92 | 98 | 99 | 98 | 100 |