Information for Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer (Motif 9)

C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T
Reverse Opposite:
T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C
p-value:1e-1973
log p-value:-4.544e+03
FDR:NA
Information Content per bp:1.494
Number of Target Sequences with motif3338.0
Percentage of Target Sequences with motif83.39%
Number of Background Sequences with motif6133.7
Percentage of Background Sequences with motif15.48%
Average Position of motif in Targets51.9 +/- 24.2bp
Average Position of motif in Background50.0 +/- 38.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:NNVVCAGCTGBN
NNVVCAGCTGBN
 C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T

BHLHA15(var.2)/MA1472.1/Jaspar

Match Rank:2
Score:0.96
Offset:2
Orientation:reverse strand
Alignment:NNVVCAGCTGBN
--NACAGCTGTT
 C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T
A C G T A C G T T C G A T C G A A G T C C G T A A C T G T G A C C G A T C A T G A C G T A G C T

ASCL1/MA1100.2/Jaspar

Match Rank:3
Score:0.95
Offset:2
Orientation:forward strand
Alignment:NNVVCAGCTGBN
--GGCAGCTGCC
 C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T
A C G T A C G T T C A G T C A G A G T C G C T A A T C G T A G C C A G T C T A G A G T C A G T C

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:4
Score:0.95
Offset:3
Orientation:reverse strand
Alignment:NNVVCAGCTGBN-
---GCAGCTGTNN
 C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T
A C G T A C G T A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C T G G C A T

Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer

Match Rank:5
Score:0.95
Offset:3
Orientation:forward strand
Alignment:NNVVCAGCTGBN-
---MCAGCTGBYH
 C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T
A C G T A C G T A C G T T G A C A G T C C G T A A C T G G T A C A C G T A C T G A C G T G A C T G A T C

Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:NNVVCAGCTGBN
-NAACAGCTGT-
 C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T
A C G T T C A G T G C A T C G A A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C G T

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:7
Score:0.95
Offset:3
Orientation:forward strand
Alignment:NNVVCAGCTGBN-
---VCAGCTGBNN
 C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T
A C G T A C G T A C G T T G A C A T G C C G T A A T C G A T G C C A G T C A T G A C T G A G T C G T A C

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:8
Score:0.94
Offset:0
Orientation:forward strand
Alignment:NNVVCAGCTGBN
VNAVCAGCTGGC
 C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T
T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:NNVVCAGCTGBN
-CAGCAGCTGN-
 C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T
A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T

BHLHE22(var.2)/MA1635.1/Jaspar

Match Rank:10
Score:0.94
Offset:2
Orientation:reverse strand
Alignment:NNVVCAGCTGBN
--NNCAGCTGNN
 C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T
A C G T A C G T A T G C T A C G A T G C T C G A A T C G T A G C A G C T T C A G A T G C T A C G