Information for RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer (Motif 62)

C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C
Reverse Opposite:
A T C G A C G T A T C G T G C A G T A C A G T C A G C T A T G C C G A T T A C G A T G C G T A C G A C T T A C G T G C A G T A C G A T C A G C T
p-value:1e-515
log p-value:-1.186e+03
FDR:NA
Information Content per bp:1.621
Number of Target Sequences with motif330.0
Percentage of Target Sequences with motif11.71%
Number of Background Sequences with motif58.3
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets49.7 +/- 20.8bp
Average Position of motif in Background53.3 +/- 33.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:RGGTCADNNAGAGGTCAV
RGGTCADNNAGAGGTCAV
 C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

RARA::RXRA/MA0159.1/Jaspar

Match Rank:2
Score:0.96
Offset:0
Orientation:forward strand
Alignment:RGGTCADNNAGAGGTCAV
AGGTCACGGAGAGGTCA-
 C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A A C G T

RARA::RXRG/MA1149.1/Jaspar

Match Rank:3
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-RGGTCADNNAGAGGTCAV
GAGGTCATGTAGAGGTCA-
 A C G T C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C
C T A G T C G A C A T G C A T G A C G T A G T C C T G A G C A T A T C G A C G T C T G A T C A G T C G A C A T G C A T G A C G T A G T C T C G A A C G T

RARA(var.2)/MA0730.1/Jaspar

Match Rank:4
Score:0.93
Offset:0
Orientation:forward strand
Alignment:RGGTCADNNAGAGGTCAV
AGGTCATGCAAAGGTCA-
 C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C
T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A A C G T

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:5
Score:0.92
Offset:0
Orientation:forward strand
Alignment:RGGTCADNNAGAGGTCAV
AGGTCAACTAAAGGTCA-
 C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C
T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.69
Offset:9
Orientation:forward strand
Alignment:RGGTCADNNAGAGGTCAV
---------TRAGGTCA-
 C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.68
Offset:5
Orientation:forward strand
Alignment:RGGTCADNNAGAGGTCAV
-----NRBCARRGGTCA-
 C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C
A C G T A C G T A C G T A C G T A C G T T C A G T C A G A C G T G T A C G C T A T C A G C T G A A C T G A C T G A G C T A G T C C G T A A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:forward strand
Alignment:RGGTCADNNAGAGGTCAV
AGGTCA------------
 C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.67
Offset:9
Orientation:forward strand
Alignment:RGGTCADNNAGAGGTCAV
---------AGRGGTCA-
 C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-RGGTCADNNAGAGGTCAV
GAGGTCAT-----------
 A C G T C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C
T C A G T C G A A C T G A C T G A C G T A G T C C T G A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T