Information for RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer (Motif 61)

T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A
Reverse Opposite:
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T
p-value:1e-493
log p-value:-1.136e+03
FDR:NA
Information Content per bp:1.710
Number of Target Sequences with motif507.0
Percentage of Target Sequences with motif17.99%
Number of Background Sequences with motif367.0
Percentage of Background Sequences with motif0.81%
Average Position of motif in Targets50.7 +/- 22.6bp
Average Position of motif in Background50.9 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:AGGTCAAGGTCA
AGGTCAAGGTCA
 T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.98
Offset:0
Orientation:forward strand
Alignment:AGGTCAAGGTCA
AGGTCAAGGTCA
 T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

Nr5a2/MA0505.1/Jaspar

Match Rank:3
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAAGGTCA--
AAGTTCAAGGTCAGC
 A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

NR6A1/MA1541.1/Jaspar

Match Rank:4
Score:0.88
Offset:-4
Orientation:forward strand
Alignment:----AGGTCAAGGTCA-
GTCAAGTTCAAGGTCAA
 A C G T A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T
A C T G A G C T A T G C C T G A T G C A C A T G C A G T A G C T A G T C C G T A G T C A C A T G C A T G A C G T A G T C C T G A C G T A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.83
Offset:2
Orientation:forward strand
Alignment:AGGTCAAGGTCA
--NTCAAGGTCA
 T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A
A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.83
Offset:2
Orientation:forward strand
Alignment:AGGTCAAGGTCA
--BTCAAGGTCA
 T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A
A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

NR5A1/MA1540.1/Jaspar

Match Rank:7
Score:0.82
Offset:2
Orientation:forward strand
Alignment:AGGTCAAGGTCA-
--GTCAAGGTCAC
 T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T
A C G T A C G T A C T G G A C T A T G C C T G A C G T A A C T G A C T G G A C T A G T C C T G A G A T C

ESRRA/MA0592.3/Jaspar

Match Rank:8
Score:0.81
Offset:1
Orientation:forward strand
Alignment:AGGTCAAGGTCA--
-GCTCAAGGTCACA
 T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T A C G T
A C G T C A T G A G T C G A C T T A G C C T G A T C G A C A T G C A T G C G A T A G T C C T G A G A T C T C G A

ESRRB/MA0141.3/Jaspar

Match Rank:9
Score:0.79
Offset:3
Orientation:forward strand
Alignment:AGGTCAAGGTCA--
---TCAAGGTCATA
 T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T A C G T
A C G T A C G T A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---AGGTCAAGGTCA
CAAAGKTCAA-----
 A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A
G A T C G T C A T C G A T C G A C T A G C A T G A G C T G T A C T C G A T C G A A C G T A C G T A C G T A C G T A C G T