Information for DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer (Motif 60)

G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C
Reverse Opposite:
C T A G G T C A G C A T C G T A A T G C G C T A C G T A C G A T T C A G G C A T C G T A C G A T G T A C G C T A C T G A
p-value:1e-4625
log p-value:-1.065e+04
FDR:NA
Information Content per bp:1.566
Number of Target Sequences with motif3873.0
Percentage of Target Sequences with motif34.48%
Number of Background Sequences with motif371.8
Percentage of Background Sequences with motif1.01%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:YDGHTACAWTGTADC
YDGHTACAWTGTADC
 G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C
G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C

DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer

Match Rank:2
Score:1.00
Offset:0
Orientation:forward strand
Alignment:YDGHTACAWTGTADC
TWGHWACAWTGTWDC
 G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C
G C A T C G A T C T A G G C T A G C A T C G T A G A T C G C T A C G A T C G A T C T A G C G A T C G T A C G A T G A T C

dmrt99B/MA1455.1/Jaspar

Match Rank:3
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:YDGHTACAWTGTADC--
TTGNTACATTGTANCAA
 G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C A C G T A C G T
G C A T G A C T C T A G G C T A G C A T C T G A A G T C C G T A A G C T G C A T C T A G G A C T C G T A C G T A G A T C C G T A C G T A

Dmrt1/MA1603.1/Jaspar

Match Rank:4
Score:0.90
Offset:2
Orientation:reverse strand
Alignment:YDGHTACAWTGTADC
--GNTACTTTGTATC
 G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C
A C G T A C G T C A T G G C T A G C A T G C T A G A T C G C A T C G A T C G A T C T A G G C A T C G T A C G A T G A T C

dsx/dmmpmm(Bergman)/fly

Match Rank:5
Score:0.85
Offset:0
Orientation:forward strand
Alignment:YDGHTACAWTGTADC--
NTAANACAATGTANCNN
 G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C A C G T A C G T
A C T G A G C T T C G A G T C A A G T C C G T A A G T C C G T A C G T A C G A T A C T G A G C T C G T A C A G T A G T C C G A T A G C T

DMRTA2/MA1478.1/Jaspar

Match Rank:6
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--YDGHTACAWTGTADC
AATTGTTACATT-----
 A C G T A C G T G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C
G C T A C G T A G C A T A G C T A C T G G C A T G C A T C T G A A G T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Tb_0216(RRM)/Trypanosoma_brucei-RNCMPT00216-PBM/HughesRNA

Match Rank:7
Score:0.69
Offset:6
Orientation:forward strand
Alignment:YDGHTACAWTGTADC
------CATTGTN--
 G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T C G A T A C T G A C G T C G T A A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-YDGHTACAWTGTADC
NTTGATACATT-----
 A C G T G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C
C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

DMRTC2/MA1479.1/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--YDGHTACAWTGTADC
AATTGATACATT-----
 A C G T A C G T G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C
G C T A C G T A G C A T A C G T A T C G G T C A G C A T G T C A A T G C C G T A G C A T C A G T A C G T A C G T A C G T A C G T A C G T

SOX2/MA0143.4/Jaspar

Match Rank:10
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:YDGHTACAWTGTADC
---NNCCATTGTNN-
 G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C
A C G T A C G T A C G T C G A T G C A T G A T C G A T C G C T A A G C T C G A T C T A G C G A T G C A T G C A T A C G T