Information for Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer (Motif 58)

C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C
Reverse Opposite:
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T
p-value:1e-1956
log p-value:-4.505e+03
FDR:NA
Information Content per bp:1.572
Number of Target Sequences with motif1398.0
Percentage of Target Sequences with motif34.48%
Number of Background Sequences with motif285.0
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets99.2 +/- 46.8bp
Average Position of motif in Background105.3 +/- 54.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:ACTYKNATTCGTGNTACTTC
ACTYKNATTCGTGNTACTTC
 C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C

SIG1/SIG1_H2O2Hi/[](Harbison)/Yeast

Match Rank:2
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:ACTYKNATTCGTGNTACTTC
-------TTGTTGATTCCT-
 C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T C A T G C G A T A G C T A C T G C G A T A C G T C A G T A G T C G A T C C G A T A C G T

CG5213(RRM)/Drosophila_melanogaster-RNCMPT00010-PBM/HughesRNA

Match Rank:3
Score:0.58
Offset:13
Orientation:forward strand
Alignment:ACTYKNATTCGTGNTACTTC-
-------------ATACTTTG
 C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C T G A G A T C A C G T A C G T A C G T C T A G

HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer

Match Rank:4
Score:0.55
Offset:6
Orientation:forward strand
Alignment:ACTYKNATTCGTGNTACTTC-
------NTTCTAGAAKCTTCT
 C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T G C A T A G T C A G C T T C G A T A C G G C T A C G T A A C T G G T A C G C A T C G A T A G T C G A C T

HSFB2B/MA1666.1/Jaspar

Match Rank:5
Score:0.54
Offset:7
Orientation:forward strand
Alignment:ACTYKNATTCGTGNTACTTC-
-------TTCTAGAAGCTTCT
 C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T G A C T A G T C A G C T T C G A A T C G G C T A C G T A A C T G A T G C G C A T G C A T G A T C A G C T

HSF1/HSF1_H2O2Lo/11-HSF1(Harbison)/Yeast

Match Rank:6
Score:0.54
Offset:7
Orientation:forward strand
Alignment:ACTYKNATTCGTGNTACTTC
-------TTCTAGNNCNTTC
 C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T G T A C A G C T C T G A A T C G T C G A T C G A A T G C T A G C A G C T A G C T A G T C

PB0155.1_Osr2_2/Jaspar

Match Rank:7
Score:0.54
Offset:8
Orientation:forward strand
Alignment:ACTYKNATTCGTGNTACTTC----
--------ACTTGCTACCTACACC
 C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A G A T C G A C T G A C T T A C G A G T C G A C T G C T A G T A C G A T C G C A T T C G A G T A C C G T A A G C T T G A C

HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer

Match Rank:8
Score:0.54
Offset:6
Orientation:forward strand
Alignment:ACTYKNATTCGTGNTACTTC-
------NTTCTAGAANHTTCT
 C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T G C A T G C A T A T G C A G C T T C G A T A C G G C T A C G T A C A T G G T A C G C A T G C A T A G T C A G C T

DMRT3/MA0610.1/Jaspar

Match Rank:9
Score:0.54
Offset:9
Orientation:reverse strand
Alignment:ACTYKNATTCGTGNTACTTC
---------NTTGATACATT
 C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T

HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:ACTYKNATTCGTGNTACTTC-
------NTTCTAGAANCTTCY
 C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T A C G C A T C G A T A T G C A G C T T C G A T A C G C G T A C G T A C A T G T A G C G C A T G A C T G T A C A G C T