Information for Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer (Motif 53)

G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T
Reverse Opposite:
C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T
p-value:1e-683
log p-value:-1.575e+03
FDR:NA
Information Content per bp:1.705
Number of Target Sequences with motif1230.0
Percentage of Target Sequences with motif18.65%
Number of Background Sequences with motif978.0
Percentage of Background Sequences with motif2.35%
Average Position of motif in Targets52.1 +/- 23.5bp
Average Position of motif in Background50.5 +/- 35.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:HNRAATCAAT
HNRAATCAAT
 G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:2
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:HNRAATCAAT--
--DGATCRATAN
 G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T
A C G T A C G T C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:3
Score:0.92
Offset:3
Orientation:reverse strand
Alignment:HNRAATCAAT-
---RRTCAATA
 G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T
A C G T A C G T A C G T C T A G C T G A A G C T G T A C C T G A C G T A A C G T C G T A

ONECUT1/MA0679.2/Jaspar

Match Rank:4
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-HNRAATCAAT-----
AAAAAATCAATAAATA
 A C G T G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T
C G T A C G T A C G T A G C T A C T G A C T G A G C A T G T A C C T G A C G T A G A C T C T G A G C T A G C T A G C A T G C T A

CUX1/MA0754.1/Jaspar

Match Rank:5
Score:0.90
Offset:2
Orientation:forward strand
Alignment:HNRAATCAAT--
--TAATCGATAA
 G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T
A C G T A C G T G A C T C T G A C T G A A G C T A G T C T C A G C G T A G C A T T G C A G T C A

CUX2/MA0755.1/Jaspar

Match Rank:6
Score:0.87
Offset:2
Orientation:forward strand
Alignment:HNRAATCAAT--
--TAATCGATAA
 G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T
A C G T A C G T G C A T C T G A C T G A A G C T A G T C C T A G C G T A G C A T G C T A G C T A

RBM46(RRM)/Homo_sapiens-RNCMPT00054-PBM/HughesRNA

Match Rank:7
Score:0.86
Offset:3
Orientation:forward strand
Alignment:HNRAATCAAT
---AATCAAN
 G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T
A C G T A C G T A C G T C T G A C G T A A C G T A T G C C G T A C G T A C G A T

CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer

Match Rank:8
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:HNRAATCAAT-
-NTNATCGATA
 G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T
A C G T G C A T A G C T C A G T T C G A A G C T G A T C C T A G T C G A A C G T T G C A

onecut/MA0235.1/Jaspar

Match Rank:9
Score:0.85
Offset:2
Orientation:reverse strand
Alignment:HNRAATCAAT
--AAATCAA-
 G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T
A C G T A C G T G C T A C G T A C G T A A C G T A G T C C G T A C T G A A C G T

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:10
Score:0.85
Offset:2
Orientation:forward strand
Alignment:HNRAATCAAT--
--TAATCAATTA
 G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T
A C G T A C G T C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A