Information for CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer (Motif 52)

A C G T T G C A A G C T G A T C C T A G C T G A A G C T G T C A T C G A C G T A
Reverse Opposite:
G C A T A G C T C A G T T C G A A G C T G A T C C T A G T C G A A C G T T G C A
p-value:1e-363
log p-value:-8.377e+02
FDR:NA
Information Content per bp:1.612
Number of Target Sequences with motif694.0
Percentage of Target Sequences with motif41.61%
Number of Background Sequences with motif2904.7
Percentage of Background Sequences with motif6.46%
Average Position of motif in Targets49.8 +/- 23.0bp
Average Position of motif in Background50.9 +/- 38.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TATCGATNAN
TATCGATNAN
 A C G T T G C A A G C T G A T C C T A G C T G A A G C T G T C A T C G A C G T A
A C G T T G C A A G C T G A T C C T A G C T G A A G C T G T C A T C G A C G T A

CUX1/MA0754.1/Jaspar

Match Rank:2
Score:0.96
Offset:-1
Orientation:reverse strand
Alignment:-TATCGATNAN
NTATCGATTA-
 A C G T A C G T T G C A A G C T G A T C C T A G C T G A A G C T G T C A T C G A C G T A
C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A A C G T

CUX2/MA0755.1/Jaspar

Match Rank:3
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-TATCGATNAN
TTATCGATTA-
 A C G T A C G T T G C A A G C T G A T C C T A G C T G A A G C T G T C A T C G A C G T A
C G A T C G A T C G T A G C A T G A T C T C A G T C G A G A C T G A C T C G T A A C G T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:4
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-TATCGATNAN
NTATYGATCH-
 A C G T A C G T T G C A A G C T G A T C C T A G C T G A A G C T G T C A T C G A C G T A
C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C A C G T

DREF/Drosophila-Promoters/Homer

Match Rank:5
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---TATCGATNAN
AVYTATCGATAD-
 A C G T A C G T A C G T A C G T T G C A A G C T G A T C C T A G C T G A A G C T G T C A T C G A C G T A
C G T A T C G A G A T C G C A T C G T A A C G T G T A C T C A G G T C A G A C T C G T A C T A G A C G T

ceh-28/MA1445.1/Jaspar

Match Rank:6
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-TATCGATNAN
AAATCGATTT-
 A C G T A C G T T G C A A G C T G A T C C T A G C T G A A G C T G T C A T C G A C G T A
G C T A C G T A T C G A A G C T G T A C A C T G C T G A A G C T G C A T C G A T A C G T

Dref/MA1456.1/Jaspar

Match Rank:7
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--TATCGATNAN
GCTATCGATA--
 A C G T A C G T A C G T T G C A A G C T G A T C C T A G C T G A A G C T G T C A T C G A C G T A
T C A G G A T C A C G T C G T A A C G T A G T C A C T G C G T A G C A T C G T A A C G T A C G T

BEAF-32/MA0529.2/Jaspar

Match Rank:8
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--TATCGATNAN
ACTATCGATAGT
 A C G T A C G T A C G T T G C A A G C T G A T C C T A G C T G A A G C T G T C A T C G A C G T A
C T G A G T A C G C A T C G T A G A C T G A T C C T A G C T G A G C A T C G T A C A T G G A C T

pnr/MA0536.1/Jaspar

Match Rank:9
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---TATCGATNAN
ANCTATCGATA--
 A C G T A C G T A C G T A C G T T G C A A G C T G A T C C T A G C T G A A G C T G T C A T C G A C G T A
T C G A T C G A G T A C G C A T C G T A A C G T A G T C A C T G T C G A C G A T C T G A A C G T A C G T

ceh-48/MA0921.1/Jaspar

Match Rank:10
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-TATCGATNAN
NTATCGATN--
 A C G T A C G T T G C A A G C T G A T C C T A G C T G A A G C T G T C A T C G A C G T A
C G A T C G A T C G T A C G A T G A T C C A T G C T G A G C A T G A C T A C G T A C G T