Information for COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer (Motif 46)

T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A
Reverse Opposite:
A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T
p-value:1e-307
log p-value:-7.087e+02
FDR:NA
Information Content per bp:1.743
Number of Target Sequences with motif956.0
Percentage of Target Sequences with motif42.32%
Number of Background Sequences with motif5284.7
Percentage of Background Sequences with motif11.26%
Average Position of motif in Targets51.5 +/- 24.4bp
Average Position of motif in Background49.9 +/- 31.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.37
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:AGRGGTCA
AGRGGTCA
 T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

NR2C1/MA1535.1/Jaspar

Match Rank:2
Score:0.98
Offset:0
Orientation:forward strand
Alignment:AGRGGTCA-
CGAGGTCAC
 T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T
G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.98
Offset:-4
Orientation:forward strand
Alignment:----AGRGGTCA
NRBCARRGGTCA
 A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A
T C A G T C A G A C G T G T A C G C T A T C A G C T G A A C T G A C T G A G C T A G T C C G T A

COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer

Match Rank:4
Score:0.96
Offset:-4
Orientation:forward strand
Alignment:----AGRGGTCA
GKBCARAGGTCA
 A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A
T A C G A C T G A G C T G T A C C G T A T C G A C T G A A C T G C A T G A C G T A G T C C G T A

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:5
Score:0.95
Offset:1
Orientation:forward strand
Alignment:AGRGGTCA-
-GAGGTCAT
 T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T
A C G T T C A G T C G A A C T G A C T G A C G T A G T C C T G A G C A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.95
Offset:2
Orientation:forward strand
Alignment:AGRGGTCA
--AGGTCA
 T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.93
Offset:0
Orientation:forward strand
Alignment:AGRGGTCA
TRAGGTCA
 T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

PB0057.1_Rxra_1/Jaspar

Match Rank:8
Score:0.93
Offset:-4
Orientation:reverse strand
Alignment:----AGRGGTCA-----
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

PB0118.1_Esrra_2/Jaspar

Match Rank:9
Score:0.92
Offset:-4
Orientation:forward strand
Alignment:----AGRGGTCA-----
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-AGRGGTCA----
CAAAGGTCAAGGG
 A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G