Information for ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer (Motif 436)

A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C
Reverse Opposite:
T A C G G A T C G A T C G A C T A G T C A G T C G C A T A G T C A G T C G T A C A G C T A G T C G C T A T C A G C T G A A G T C G A C T T A C G A C T G T A G C
p-value:1e-2178
log p-value:-5.015e+03
FDR:NA
Information Content per bp:1.657
Number of Target Sequences with motif2072.0
Percentage of Target Sequences with motif9.67%
Number of Background Sequences with motif96.6
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets52.2 +/- 20.2bp
Average Position of motif in Background47.9 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:SMCAGTCWGAKGGAGGAGGC
SMCAGTCWGAKGGAGGAGGC
 A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C

SRSF1(RRM)/Homo_sapiens-RNCMPT00163-PBM/HughesRNA

Match Rank:2
Score:0.67
Offset:11
Orientation:forward strand
Alignment:SMCAGTCWGAKGGAGGAGGC
-----------GGAGGAG--
 A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C T G A C T A G T C A G G T C A T A C G A C G T A C G T

ZNF263/MA0528.2/Jaspar

Match Rank:3
Score:0.66
Offset:7
Orientation:forward strand
Alignment:SMCAGTCWGAKGGAGGAGGC
-------GGGGGGAGGAGG-
 A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A T C G C T A G T A C G A T C G A C T G G T C A A C T G A T C G T G C A T A C G A T C G A C G T

Znf281/MA1630.1/Jaspar

Match Rank:4
Score:0.65
Offset:8
Orientation:forward strand
Alignment:SMCAGTCWGAKGGAGGAGGC
--------GGTGGGGGAGG-
 A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G C T T A C G T A C G T A C G A T C G A C T G G T C A C A T G T C A G A C G T

PF10_0068(RRM)/Plasmodium_falciparum-RNCMPT00199-PBM/HughesRNA

Match Rank:5
Score:0.64
Offset:10
Orientation:forward strand
Alignment:SMCAGTCWGAKGGAGGAGGC
----------NGGAGGAA--
 A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G A C T G C G T A A C T G A C T G C G T A C T G A A C G T A C G T

NCU02404(RRM)/Neurospora_crassa-RNCMPT00238-PBM/HughesRNA

Match Rank:6
Score:0.64
Offset:11
Orientation:forward strand
Alignment:SMCAGTCWGAKGGAGGAGGC
-----------GGAGGAA--
 A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A C T G C G T A C T G A A C G T A C G T

TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer

Match Rank:7
Score:0.62
Offset:8
Orientation:forward strand
Alignment:SMCAGTCWGAKGGAGGAGGC---
--------NNDDGAGGAGGWNNN
 A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G C T G A C T G A C T A G C T G A C A T G C A T G C T G A C T A G C T A G C G T A C T A G C G T A G T C A

SF2(RRM)/Drosophila_melanogaster-RNCMPT00066-PBM/HughesRNA

Match Rank:8
Score:0.62
Offset:10
Orientation:forward strand
Alignment:SMCAGTCWGAKGGAGGAGGC
----------NGGAGGA---
 A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G C T A G G C T A A C T G A C T G C T G A A C G T A C G T A C G T

SRSF1(RRM)/Homo_sapiens-RNCMPT00108-PBM/HughesRNA

Match Rank:9
Score:0.61
Offset:11
Orientation:forward strand
Alignment:SMCAGTCWGAKGGAGGAGGC
-----------GGAGGAN--
 A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A T C G A C T G C T G A T C A G A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:10
Score:0.59
Offset:7
Orientation:forward strand
Alignment:SMCAGTCWGAKGGAGGAGGC
-------RGKGGGCGGAGC-
 A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T