Information for Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer (Motif 410)

C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C
Reverse Opposite:
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C
p-value:1e-4248
log p-value:-9.782e+03
FDR:NA
Information Content per bp:1.601
Number of Target Sequences with motif8311.0
Percentage of Target Sequences with motif36.12%
Number of Background Sequences with motif1471.2
Percentage of Background Sequences with motif5.58%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GGCCYCCTGCTGDGH
GGCCYCCTGCTGDGH
 C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:2
Score:0.97
Offset:2
Orientation:reverse strand
Alignment:GGCCYCCTGCTGDGH
--CCYCCYGCTGDG-
 C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C
A C G T A C G T A G T C A T G C G A T C A G T C G T A C G A C T C T A G A G T C C G A T A C T G C A G T A C T G A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.96
Offset:2
Orientation:reverse strand
Alignment:GGCCYCCTGCTGDGH
--CCCCCTGCTGTG-
 C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

Zic2/MA1629.1/Jaspar

Match Rank:4
Score:0.96
Offset:2
Orientation:reverse strand
Alignment:GGCCYCCTGCTGDGH-
--CCCCCTGCTGTGNN
 C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T
A C G T A C G T A G T C A G T C G A T C T A G C G T A C G A C T T C A G A T G C C A G T A T C G C G A T A C T G G T C A A C T G

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:5
Score:0.92
Offset:3
Orientation:reverse strand
Alignment:GGCCYCCTGCTGDGH
---NNCCTGCTGNG-
 C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C
A C G T A C G T A C G T A G T C A T G C T G A C T A G C A G C T T C A G A T G C A C G T T C A G A G C T A T C G A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.92
Offset:2
Orientation:reverse strand
Alignment:GGCCYCCTGCTGDGH--
--TCNCCTGCTGNGNNN
 C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T
A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.91
Offset:2
Orientation:reverse strand
Alignment:GGCCYCCTGCTGDGH--
--TNTCCTGCTGTGNNG
 C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T
A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.91
Offset:5
Orientation:forward strand
Alignment:GGCCYCCTGCTGDGH
-----CCTGCTGAGH
 C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C
A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.89
Offset:2
Orientation:reverse strand
Alignment:GGCCYCCTGCTGDGH--
--NNTCCTGCTGTGNNN
 C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T
A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.87
Offset:0
Orientation:forward strand
Alignment:GGCCYCCTGCTGDGH
GACCCCCCGCTGTG-
 C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T