Information for Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer (Motif 409)

T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G
Reverse Opposite:
A G T C A T G C G A T C A G T C G T A C G A C T C T A G A G T C C G A T A C T G C A G T A C T G
p-value:1e-2923
log p-value:-6.731e+03
FDR:NA
Information Content per bp:1.690
Number of Target Sequences with motif5104.0
Percentage of Target Sequences with motif30.89%
Number of Background Sequences with motif1300.9
Percentage of Background Sequences with motif3.96%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:CHCAGCRGGRGG
CHCAGCRGGRGG
 T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G
T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.97
Offset:-1
Orientation:reverse strand
Alignment:-CHCAGCRGGRGG--
DCHCAGCAGGRGGCC
 A C G T T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.96
Offset:0
Orientation:forward strand
Alignment:CHCAGCRGGRGG
CACAGCAGGGGG
 T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic2/MA1629.1/Jaspar

Match Rank:4
Score:0.95
Offset:-2
Orientation:forward strand
Alignment:--CHCAGCRGGRGG
CTCACAGCAGGGGG
 A C G T A C G T T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G
T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.92
Offset:-3
Orientation:forward strand
Alignment:---CHCAGCRGGRGG
CCACACAGCAGGAGA
 A C G T A C G T A C G T T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.92
Offset:-3
Orientation:forward strand
Alignment:---CHCAGCRGGRGG
CCACACAGCAGGAGA
 A C G T A C G T A C G T T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-CHCAGCRGGRGG
DCTCAGCAGG---
 A C G T T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:8
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CHCAGCRGGRGG
CACAGCAGGGG-
 T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---CHCAGCRGGRGG
GAGCACAGCAGGACA
 A C G T A C G T A C G T T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:CHCAGCRGGRGG--
CACAGCGGGGGGTC
 T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G A C G T A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C