Information for X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer (Motif 396)

C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A
Reverse Opposite:
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C
p-value:
log p-value:-2.713e+03
FDR:0.000
Information Content per bp:1.691
Number of Target Sequences with motif
Percentage of Target Sequences with motif
Number of Background Sequences with motif
Percentage of Background Sequences with motif
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GGTTGCCATGGCAA
GGTTGCCATGGCAA
 C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.99
Offset:0
Orientation:forward strand
Alignment:GGTTGCCATGGCAA
NGTTGCCATGGCAA
 C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX1/RFX1_YPD/[](Harbison)/Yeast

Match Rank:3
Score:0.96
Offset:1
Orientation:reverse strand
Alignment:GGTTGCCATGGCAA
-GTTGCCATGGCAA
 C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A
A C G T A T C G A C G T G A C T T C A G A G T C A G T C C T G A A G C T C T A G T C A G A G T C C T G A C G T A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:GGTTGCCATGGCAA-
KGTTGCCATGGCAAC
 C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:5
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-GGTTGCCATGGCAA-
CGGTTGCCATGGCAAC
 A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

RFX1(MacIsaac)/Yeast

Match Rank:6
Score:0.93
Offset:1
Orientation:forward strand
Alignment:GGTTGCCATGGCAA-
-GTTGCCATGGCAAC
 C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T
A C G T A T C G C G A T G A C T T A C G A G T C G A T C T G C A A C G T C T A G A C T G A G T C C T G A C T G A A G T C

RFX5/MA0510.2/Jaspar

Match Rank:7
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:GGTTGCCATGGCAA--
NGTTGCCATGGCAACG
 C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:8
Score:0.92
Offset:0
Orientation:forward strand
Alignment:GGTTGCCATGGCAA--
CGTTGCCATGGCAACG
 C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX3/MA0798.2/Jaspar

Match Rank:9
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-GGTTGCCATGGCAA
CGGTTGCTATGGCA-
 A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A
A G T C A C T G C T A G A G C T G A C T C T A G G A T C G A C T T C G A C A G T C T A G T C A G G T A C C T G A A C G T

RFX4/MA0799.1/Jaspar

Match Rank:10
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:GGTTGCCATGGCAA--
CGTTGCCATGGCAACN
 C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G