Information for THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer (Motif 387)

C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A
Reverse Opposite:
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C
p-value:1e-1646
log p-value:-3.791e+03
FDR:NA
Information Content per bp:1.566
Number of Target Sequences with motif2366.0
Percentage of Target Sequences with motif40.84%
Number of Background Sequences with motif1795.8
Percentage of Background Sequences with motif4.10%
Average Position of motif in Targets98.6 +/- 33.4bp
Average Position of motif in Background97.1 +/- 60.9bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GGTCANYTGAGGWCA
GGTCANYTGAGGWCA
 C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.98
Offset:0
Orientation:forward strand
Alignment:GGTCANYTGAGGWCA
GGTCACCTGAGGTCA
 C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A
C A T G A C T G A G C T A T G C C G T A A T G C G T A C G A C T T A C G C T G A A C T G A C T G G C A T A T G C C T G A

THRB(var.3)/MA1576.1/Jaspar

Match Rank:3
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---GGTCANYTGAGGWCA-
TAAGGTCACGTNAGGTCAC
 A C G T A C G T A C G T C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A A C G T
A G C T T C G A C T G A C A T G C T A G C G A T G T A C G T C A A G T C T A C G A G C T T C G A T C G A T A C G T C A G C G A T T A G C C T G A G A T C

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:4
Score:0.82
Offset:-4
Orientation:reverse strand
Alignment:----GGTCANYTGAGGWCA
NNGAGGTTACTNNAGGTCA
 A C G T A C G T A C G T A C G T C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:5
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--GGTCANYTGAGGWCA
AAGGTCACGAAAGGTCA
 A C G T A C G T C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A
C T G A T C G A A T C G A C T G A C G T G T A C T C G A G T A C A T C G T C G A T C G A T C G A A C T G A C T G G C A T G A T C T C G A

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-GGTCANYTGAGGWCA
GGGTTACTANAGGTCA
 A C G T C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A
C T A G C A T G C A T G A G C T G A C T C G T A G A T C A G C T G T C A A T G C T C G A C T A G C A T G A C G T A G T C C T G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.77
Offset:7
Orientation:forward strand
Alignment:GGTCANYTGAGGWCA
-------TRAGGTCA
 C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.72
Offset:9
Orientation:forward strand
Alignment:GGTCANYTGAGGWCA
---------AGGTCA
 C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:9
Score:0.71
Offset:3
Orientation:forward strand
Alignment:GGTCANYTGAGGWCA
---NRBCARRGGTCA
 C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A
A C G T A C G T A C G T T C A G T C A G A C G T G T A C G C T A T C A G C T G A A C T G A C T G A G C T A G T C C G T A

NR2C1/MA1535.1/Jaspar

Match Rank:10
Score:0.70
Offset:7
Orientation:forward strand
Alignment:GGTCANYTGAGGWCA-
-------CGAGGTCAC
 C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C