Information for TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer (Motif 386)

T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A
Reverse Opposite:
G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C
p-value:
log p-value:-1.414e+03
FDR:0.000
Information Content per bp:1.730
Number of Target Sequences with motif
Percentage of Target Sequences with motif
Number of Background Sequences with motif
Percentage of Background Sequences with motif
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GAGGTCAAAGGTCA
GAGGTCAAAGGTCA
 T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

NR2C2/MA0504.1/Jaspar

Match Rank:2
Score:0.98
Offset:-1
Orientation:forward strand
Alignment:-GAGGTCAAAGGTCA
AGGGGTCAGAGGTCA
 A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

Nr2f6/MA0677.1/Jaspar

Match Rank:3
Score:0.98
Offset:0
Orientation:forward strand
Alignment:GAGGTCAAAGGTCA
GAGGTCAAAGGTCA
 T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

NR2F1(var.2)/MA1537.1/Jaspar

Match Rank:4
Score:0.98
Offset:0
Orientation:forward strand
Alignment:GAGGTCAAAGGTCA-
GAGGTCAAAGGTCAC
 T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T
T C A G T C G A C A T G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C C T G A G T A C

PPARD/MA1550.1/Jaspar

Match Rank:5
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-GAGGTCAAAGGTCA-
AGGGGTCAAAGGTCAA
 A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T
G C T A T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C C T G A G T C A

THRB/MA1574.1/Jaspar

Match Rank:6
Score:0.97
Offset:0
Orientation:forward strand
Alignment:GAGGTCAAAGGTCA-
GGGGTCAAAGGTCAT
 T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A C A T G C A T G A C G T A G T C C T G A A G C T

Rxra/MA0512.2/Jaspar

Match Rank:7
Score:0.97
Offset:0
Orientation:forward strand
Alignment:GAGGTCAAAGGTCA
GGGGTCAAAGGTCA
 T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

RXRG/MA0856.1/Jaspar

Match Rank:8
Score:0.97
Offset:0
Orientation:forward strand
Alignment:GAGGTCAAAGGTCA
GGGGTCAAAGGTCA
 T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

RXRB/MA0855.1/Jaspar

Match Rank:9
Score:0.96
Offset:0
Orientation:forward strand
Alignment:GAGGTCAAAGGTCA
GGGGTCAAAGGTCA
 T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer

Match Rank:10
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-GAGGTCAAAGGTCA
VNAGGKCAAAGGTCA
 A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A
T G A C C G A T C T G A C T A G C T A G A C G T A T G C T G C A T C G A C T G A C T A G C A T G A C G T A G T C C G T A