Information for Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer (Motif 364)

C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A
Reverse Opposite:
C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T
p-value:1e-263
log p-value:-6.059e+02
FDR:NA
Information Content per bp:1.591
Number of Target Sequences with motif1253.0
Percentage of Target Sequences with motif20.20%
Number of Background Sequences with motif2767.6
Percentage of Background Sequences with motif6.75%
Average Position of motif in Targets50.7 +/- 25.9bp
Average Position of motif in Background50.7 +/- 31.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:AAGGTGTKAA
AAGGTGTKAA
 C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:2
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:AAGGTGTKAA-
-AGGTGTTAAT
 C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T
A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

TBX2/MA0688.1/Jaspar

Match Rank:3
Score:0.93
Offset:0
Orientation:forward strand
Alignment:AAGGTGTKAA-
AAGGTGTGAAA
 C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A

TBX21/MA0690.1/Jaspar

Match Rank:4
Score:0.93
Offset:0
Orientation:forward strand
Alignment:AAGGTGTKAA
AAGGTGTGAA
 C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A
C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A

EOMES/MA0800.1/Jaspar

Match Rank:5
Score:0.92
Offset:0
Orientation:forward strand
Alignment:AAGGTGTKAA---
AAGGTGTGAAAAT
 C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T A C G T
C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T

TBR1/MA0802.1/Jaspar

Match Rank:6
Score:0.92
Offset:1
Orientation:forward strand
Alignment:AAGGTGTKAA-
-AGGTGTGAAA
 C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T
A C G T C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A

Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer

Match Rank:7
Score:0.91
Offset:0
Orientation:forward strand
Alignment:AAGGTGTKAA
DAGGTGTBAA
 C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A
C T A G C T G A T C A G A T C G A G C T C A T G G A C T A G T C C T G A T G C A

Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.91
Offset:1
Orientation:forward strand
Alignment:AAGGTGTKAA-
-AGGTGTGAAA
 C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T
A C G T C T G A C T A G A C T G G C A T C T A G G C A T A T C G C T G A C G T A G T C A

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:9
Score:0.90
Offset:1
Orientation:forward strand
Alignment:AAGGTGTKAA-
-AGGTGTGAAM
 C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T
A C G T C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A

PB0013.1_Eomes_1/Jaspar

Match Rank:10
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---AAGGTGTKAA----
GAAAAGGTGTGAAAATT
 A C G T A C G T A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T A C G T A C G T
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T