Information for Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer (Motif 339)

A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T
Reverse Opposite:
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G
p-value:1e-3495
log p-value:-8.049e+03
FDR:NA
Information Content per bp:1.706
Number of Target Sequences with motif10715.0
Percentage of Target Sequences with motif60.64%
Number of Background Sequences with motif5489.6
Percentage of Background Sequences with motif17.74%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:CCWTTGTY
CCWTTGTY
 A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.96
Offset:0
Orientation:forward strand
Alignment:CCWTTGTY--
CCWTTGTYYB
 A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

SOX4/MA0867.2/Jaspar

Match Rank:3
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-CCWTTGTY-
NCCTTTGTTC
 A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T
A G T C A G T C G A T C C G A T A G C T A G C T T A C G C G A T A G C T G A T C

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-CCWTTGTY-
NCCATTGTTY
 A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-CCWTTGTY-
NCCATTGTTC
 A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.94
Offset:0
Orientation:forward strand
Alignment:CCWTTGTY--
CCATTGTTNY
 A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

SOX15/MA1152.1/Jaspar

Match Rank:7
Score:0.94
Offset:0
Orientation:forward strand
Alignment:CCWTTGTY--
CTATTGTTTT
 A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T
A G T C G A C T C G T A A C G T C G A T T C A G C G A T G A C T G A C T G C A T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.93
Offset:0
Orientation:forward strand
Alignment:CCWTTGTY--
CCATTGTTYB
 A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.93
Offset:0
Orientation:forward strand
Alignment:CCWTTGTY--
CCATTGTTTT
 A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.92
Offset:0
Orientation:forward strand
Alignment:CCWTTGTY--
CCTTTGTTTT
 A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T