Information for Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer (Motif 337)

A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G
Reverse Opposite:
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G
p-value:1e-1311
log p-value:-3.019e+03
FDR:NA
Information Content per bp:1.598
Number of Target Sequences with motif2441.0
Percentage of Target Sequences with motif24.35%
Number of Background Sequences with motif1283.6
Percentage of Background Sequences with motif3.30%
Average Position of motif in Targets49.6 +/- 25.0bp
Average Position of motif in Background49.8 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:CCATTGTTYB
CCATTGTTYB
 A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

SOX13/MA1120.1/Jaspar

Match Rank:2
Score:0.98
Offset:-2
Orientation:reverse strand
Alignment:--CCATTGTTYB
NNCCATTGTNN-
 A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G
C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.98
Offset:-1
Orientation:reverse strand
Alignment:-CCATTGTTYB
NCCATTGTTY-
 A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:4
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:CCATTGTTYB--
CCATTGTTYYBB
 A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T
A T G C G A T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G T C A T C G A C T G

SOX9/MA0077.1/Jaspar

Match Rank:5
Score:0.97
Offset:0
Orientation:forward strand
Alignment:CCATTGTTYB
CCATTGTTC-
 A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G
A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-CCATTGTTYB
NCCATTGTTC-
 A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

SOX2/MA0143.4/Jaspar

Match Rank:7
Score:0.97
Offset:-2
Orientation:reverse strand
Alignment:--CCATTGTTYB
NNCCATTGTNN-
 A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G
C G A T G C A T G A T C G A T C G C T A A G C T C G A T C T A G C G A T G C A T G C A T A C G T

SOX8/MA0868.2/Jaspar

Match Rank:8
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:CCATTGTTYB
CCATTGTTCT
 A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G
A T G C G A T C C G T A C A G T C G A T T C A G C G A T G A C T G A T C A C G T

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.96
Offset:0
Orientation:forward strand
Alignment:CCATTGTTYB
CCATTGTTTT
 A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.95
Offset:0
Orientation:forward strand
Alignment:CCATTGTTYB
CCATTGTTNY
 A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T