Information for Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer (Motif 336)

C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C
Reverse Opposite:
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T
p-value:1e-77
log p-value:-1.794e+02
FDR:NA
Information Content per bp:1.689
Number of Target Sequences with motif513.0
Percentage of Target Sequences with motif13.48%
Number of Background Sequences with motif2479.2
Percentage of Background Sequences with motif5.39%
Average Position of motif in Targets52.1 +/- 26.4bp
Average Position of motif in Background50.8 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:RAACAATGGN
RAACAATGGN
 C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.98
Offset:-1
Orientation:reverse strand
Alignment:-RAACAATGGN
VRAACAATGG-
 A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:3
Score:0.97
Offset:-3
Orientation:forward strand
Alignment:---RAACAATGGN
VVRRAACAATGG-
 A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C
T G A C T A G C T C A G T C G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T A C G A C G T

Sox6/MA0515.1/Jaspar

Match Rank:4
Score:0.97
Offset:-1
Orientation:reverse strand
Alignment:-RAACAATGGN
AAAACAATGG-
 A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:RAACAATGGN
GAACAATGGN
 C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

SOX13/MA1120.1/Jaspar

Match Rank:6
Score:0.96
Offset:0
Orientation:forward strand
Alignment:RAACAATGGN-
AAACAATGGCA
 C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T
C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A

SOX15/MA1152.1/Jaspar

Match Rank:7
Score:0.96
Offset:-1
Orientation:reverse strand
Alignment:-RAACAATGGN
AAAACAATAG-
 A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C
C G T A C T G A C T G A G C T A A G T C C G T A G T C A G C A T C T G A T C A G A C G T

SOX8/MA0868.2/Jaspar

Match Rank:8
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-RAACAATGGN
AGAACAATGG-
 A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C
T G C A C T A G C T G A C G T A A G T C C G T A G T C A G C A T C T A G T A C G A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:RAACAATGGN
-RACAAWGG-
 C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-RAACAATGGN
RNAACAATGG-
 A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T