Information for Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer (Motif 329)

C A G T A C T G C G T A G T C A C G T A A G C T G A T C A G C T A C T G C G T A A G T C G T C A A G T C A G T C A T C G
Reverse Opposite:
T A G C T C A G T C A G C A G T T C A G A C G T A G T C T C G A C T A G C T A G A C G T A C G T C G A T G T A C G T C A
p-value:1e-665
log p-value:-1.532e+03
FDR:NA
Information Content per bp:1.660
Number of Target Sequences with motif352.0
Percentage of Target Sequences with motif28.25%
Number of Background Sequences with motif76.0
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TGWAAYCTGABACCB
TGWAAYCTGABACCB
 C A G T A C T G C G T A G T C A C G T A A G C T G A T C A G C T A C T G C G T A A G T C G T C A A G T C A G T C A T C G
C A G T A C T G C G T A G T C A C G T A A G C T G A T C A G C T A C T G C G T A A G T C G T C A A G T C A G T C A T C G

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:2
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:TGWAAYCTGABACCB
-GWAAYHTGABMC--
 C A G T A C T G C G T A G T C A C G T A A G C T G A T C A G C T A C T G C G T A A G T C G T C A A G T C A G T C A T C G
A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:3
Score:0.93
Offset:1
Orientation:forward strand
Alignment:TGWAAYCTGABACCB
-GWAAYHTGAKMC--
 C A G T A C T G C G T A G T C A C G T A A G C T G A T C A G C T A C T G C G T A A G T C G T C A A G T C A G T C A T C G
A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C A C G T A C G T

SIX2/MA1119.1/Jaspar

Match Rank:4
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---TGWAAYCTGABACCB
AACTGAAACCTGATAC--
 A C G T A C G T A C G T C A G T A C T G C G T A G T C A C G T A A G C T G A T C A G C T A C T G C G T A A G T C G T C A A G T C A G T C A T C G
G C T A G C T A T G A C C G A T C A T G G C T A G T C A C T G A G A T C G T A C G C A T C T A G C G T A A C G T G T C A G A T C A C G T A C G T

SIX1/MA1118.1/Jaspar

Match Rank:5
Score:0.87
Offset:1
Orientation:forward strand
Alignment:TGWAAYCTGABACCB
-GTAACCTGATA---
 C A G T A C T G C G T A G T C A C G T A A G C T G A T C A G C T A C T G C G T A A G T C G T C A A G T C A G T C A T C G
A C G T C A T G C G A T G C T A C G T A G A T C G T A C G C A T C T A G C G T A A C G T G T C A A C G T A C G T A C G T

Six4/dmmpmm(Noyes_hd)/fly

Match Rank:6
Score:0.69
Offset:4
Orientation:forward strand
Alignment:TGWAAYCTGABACCB
----ATTTGATACC-
 C A G T A C T G C G T A G T C A C G T A A G C T G A T C A G C T A C T G C G T A A G T C G T C A A G T C A G T C A T C G
A C G T A C G T A C G T A C G T C G T A C G A T C G A T A C G T A C T G C G T A A G C T C G T A G T A C A G T C A C G T

Six4/MA0204.1/Jaspar

Match Rank:7
Score:0.63
Offset:7
Orientation:forward strand
Alignment:TGWAAYCTGABACCB
-------TGATAC--
 C A G T A C T G C G T A G T C A C G T A A G C T G A T C A G C T A C T G C G T A A G T C G T C A A G T C A G T C A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G C T C G T A G T A C A C G T A C G T

PB0105.1_Arid3a_2/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TGWAAYCTGABACCB--
--NNATNTGATANNNNN
 C A G T A C T G C G T A G T C A C G T A A G C T G A T C A G C T A C T G C G T A A G T C G T C A A G T C A G T C A T C G A C G T A C G T
A C G T A C G T G T C A C T G A G C T A A G C T G C A T G A C T A T C G T C G A A G C T T C G A A G T C A T C G A C T G C A T G C A G T

PH0164.1_Six4/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TGWAAYCTGABACCB----
--ATAAATGACACCTATCA
 C A G T A C T G C G T A G T C A C G T A A G C T G A T C A G C T A C T G C G T A A G T C G T C A A G T C A G T C A T C G A C G T A C G T A C G T A C G T
A C G T A C G T G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer

Match Rank:10
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:TGWAAYCTGABACCB
------CTGACACY-
 C A G T A C T G C G T A G T C A C G T A A G C T G A T C A G C T A C T G C G T A A G T C G T C A A G T C A G T C A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T C T A G C G T A A G T C C G T A A G T C G A C T A C G T