Information for Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer (Motif 327)

C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C
Reverse Opposite:
A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C
p-value:1e-263
log p-value:-6.060e+02
FDR:NA
Information Content per bp:1.677
Number of Target Sequences with motif436.0
Percentage of Target Sequences with motif16.96%
Number of Background Sequences with motif887.8
Percentage of Background Sequences with motif1.88%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GKVTCADRTTWC
GKVTCADRTTWC
 C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:2
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:GKVTCADRTTWC
GKMTCADRTTWC
 C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C

Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.94
Offset:-2
Orientation:reverse strand
Alignment:--GKVTCADRTTWC-
VGGTVTCAGRTTWCA
 A C G T A C G T C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T
T A G C T C A G T C A G C A G T T C A G A C G T A G T C T C G A C T A G C T A G A C G T A C G T C G A T G T A C G T C A

SIX1/MA1118.1/Jaspar

Match Rank:4
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:GKVTCADRTTWC
-TATCAGGTTAC
 C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C
A C G T C A G T T G C A G C A T G A T C C G T A C A T G C T A G G C A T C G A T G C T A G T A C

SIX2/MA1119.1/Jaspar

Match Rank:5
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:GKVTCADRTTWC----
GTATCAGGTTTCAGNN
 C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T A C G T A C G T
C T A G C A G T T G C A G C A T G A T C C G T A C A T G C T A G G A C T C A G T C G A T G T A C G C T A A C T G C G A T C G A T

USF2/MA0526.3/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GKVTCADRTTWC--
TGGTCATGTGACCT
 C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T
C A G T C T A G T C A G A G C T A T G C G T C A A G C T T C A G C A G T A T C G T C G A A G T C G A T C G C A T

USF1/MA0093.3/Jaspar

Match Rank:7
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GKVTCADRTTWC--
TGGTCATGTGACCT
 C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T
C A G T C T A G T C A G A G C T T A G C G T C A A G C T T C A G C A G T A T C G T C G A A G T C G A T C G A C T

TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GKVTCADRTTWC
BRGTCACGTGAC
 C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C
A C T G C T A G T C A G A G C T T A G C G T C A A G T C T C A G G C A T T A C G T C G A A G T C

MITF/MA0620.3/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GKVTCADRTTWC----
TAAAGTCACGTGACTTTA
 A C G T A C G T C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T A C G T A C G T
G C A T C G T A C G T A C T G A T C A G A G C T T A G C G C T A A G T C T C A G C G A T A T C G T C G A A G T C G A C T G C A T G C A T C G T A

PL0005.1_hlh-30/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GKVTCADRTTWC----
AGAATCACGTGACAATT
 A C G T C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T A C G T A C G T
G C T A A T C G C G T A C T G A G A C T A G T C C G T A A G T C C T A G C G A T C T A G C T G A A G T C G C T A G C T A C G A T A G C T