Information for Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer (Motif 311)

C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C
Reverse Opposite:
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C
p-value:1e-1867
log p-value:-4.300e+03
FDR:NA
Information Content per bp:1.712
Number of Target Sequences with motif1447.0
Percentage of Target Sequences with motif28.66%
Number of Background Sequences with motif278.5
Percentage of Background Sequences with motif0.65%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GTTGCCATGGCAACM
GTTGCCATGGCAACM
 C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:2
Score:0.99
Offset:0
Orientation:reverse strand
Alignment:GTTGCCATGGCAACM-
GTTGCCATGGCAACCG
 C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

RFX2/MA0600.2/Jaspar

Match Rank:3
Score:0.98
Offset:-1
Orientation:reverse strand
Alignment:-GTTGCCATGGCAACM
CGTTGCCATGGCAACG
 A C G T C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G

RFX5/MA0510.2/Jaspar

Match Rank:4
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGCAACM
CGTTGCCATGGCAACG
 A C G T C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

RFX1(MacIsaac)/Yeast

Match Rank:5
Score:0.97
Offset:0
Orientation:forward strand
Alignment:GTTGCCATGGCAACM
GTTGCCATGGCAAC-
 C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C
A T C G C G A T G A C T T A C G A G T C G A T C T G C A A C G T C T A G A C T G A G T C C T G A C T G A A G T C A C G T

RFX4/MA0799.1/Jaspar

Match Rank:6
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGCAACM
CGTTGCCATGGCAACG
 A C G T C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C
A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:GTTGCCATGGCAACM
-TTGCCATGGCAACN
 C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C
A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:GTTGCCATGGCAACM
-TTGCCATGGCAACC
 C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C
A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

RFX1/RFX1_YPD/[](Harbison)/Yeast

Match Rank:9
Score:0.93
Offset:1
Orientation:forward strand
Alignment:GTTGCCATGGCAACM
-TTGCCATGGCAAC-
 C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C
A C G T A C G T G A C T T C A G A G T C A G T C C T G A A G C T C T A G T C A G A G T C C T G A C G T A T A G C A C G T

RFX3/MA0798.2/Jaspar

Match Rank:10
Score:0.85
Offset:2
Orientation:reverse strand
Alignment:GTTGCCATGGCAACM-
--TNCCATAGCAACNN
 C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C A C G T
A C G T A C G T G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G