Information for Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer (Motif 31)

C G T A C G A T G A C T G A C T T G A C C T G A A T G C C T G A T A G C A G T C A C G T T C G A C A T G T A C G G A C T A T C G G A C T A C G T C T G A T C G A C G T A
Reverse Opposite:
G C A T A G C T G A C T T G C A C T G A T A G C C T G A A T G C G A T C A G C T T G C A T C A G A T C G G A C T T A C G G A C T A C T G C T G A C T G A G C T A G C A T
p-value:1e-781
log p-value:-1.800e+03
FDR:NA
Information Content per bp:1.496
Number of Target Sequences with motif658.0
Percentage of Target Sequences with motif35.11%
Number of Background Sequences with motif476.5
Percentage of Background Sequences with motif1.05%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:ANTTMRCASBNNNGTGYKAAN
ANTTMRCASBNNNGTGYKAAN
 C G T A C G A T G A C T G A C T T G A C C T G A A T G C C T G A T A G C A G T C A C G T T C G A C A T G T A C G G A C T A T C G G A C T A C G T C T G A T C G A C G T A
C G T A C G A T G A C T G A C T T G A C C T G A A T G C C T G A T A G C A G T C A C G T T C G A C A T G T A C G G A C T A T C G G A C T A C G T C T G A T C G A C G T A

TBX19/MA0804.1/Jaspar

Match Rank:2
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:ANTTMRCASBNNNGTGYKAAN
-TTTCACACCTAGGTGTGAAN
 C G T A C G A T G A C T G A C T T G A C C T G A A T G C C T G A T A G C A G T C A C G T T C G A C A T G T A C G G A C T A T C G G A C T A C G T C T G A T C G A C G T A
A C G T C G A T C G A T G A C T T G A C C T G A G A T C T C G A G A T C T G A C G A C T C G T A A C T G C T A G A G C T T C A G G A C T A C T G C T G A G T C A G C T A

TBXT/MA0009.2/Jaspar

Match Rank:3
Score:0.86
Offset:3
Orientation:reverse strand
Alignment:ANTTMRCASBNNNGTGYKAAN
---TCACACCTAGGTGTGA--
 C G T A C G A T G A C T G A C T T G A C C T G A A T G C C T G A T A G C A G T C A C G T T C G A C A T G T A C G G A C T A T C G G A C T A C G T C T G A T C G A C G T A
A C G T A C G T A C G T G A C T T G A C C T G A A G T C T C G A G A T C T G A C G A C T C G T A A C T G C T A G A G C T C T A G G A C T A C T G C T G A A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:4
Score:0.65
Offset:10
Orientation:forward strand
Alignment:ANTTMRCASBNNNGTGYKAAN
----------AAGGTGTKAA-
 C G T A C G A T G A C T G A C T T G A C C T G A A T G C C T G A T A G C A G T C A C G T T C G A C A T G T A C G G A C T A T C G G A C T A C G T C T G A T C G A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:5
Score:0.63
Offset:11
Orientation:reverse strand
Alignment:ANTTMRCASBNNNGTGYKAAN
-----------AGGTGTTAAT
 C G T A C G A T G A C T G A C T T G A C C T G A A T G C C T G A T A G C A G T C A C G T T C G A C A T G T A C G G A C T A T C G G A C T A C G T C T G A T C G A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer

Match Rank:6
Score:0.62
Offset:10
Orientation:forward strand
Alignment:ANTTMRCASBNNNGTGYKAAN
----------DAGGTGTBAA-
 C G T A C G A T G A C T G A C T T G A C C T G A A T G C C T G A T A G C A G T C A C G T T C G A C A T G T A C G G A C T A T C G G A C T A C G T C T G A T C G A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G C T G A T C A G A T C G A G C T C A T G G A C T A G T C C T G A T G C A A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:7
Score:0.61
Offset:11
Orientation:forward strand
Alignment:ANTTMRCASBNNNGTGYKAAN
-----------AGGTGTGAAM
 C G T A C G A T G A C T G A C T T G A C C T G A A T G C C T G A T A G C A G T C A C G T T C G A C A T G T A C G G A C T A T C G G A C T A C G T C T G A T C G A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A

TBX2/MA0688.1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ANTTMRCASBNNNGTGYKAAN
-TTTCACACCTN---------
 C G T A C G A T G A C T G A C T T G A C C T G A A T G C C T G A T A G C A G T C A C G T T C G A C A T G T A C G G A C T A T C G G A C T A C G T C T G A T C G A C G T A
A C G T G C A T G C A T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBX6/MA1567.1/Jaspar

Match Rank:9
Score:0.60
Offset:10
Orientation:forward strand
Alignment:ANTTMRCASBNNNGTGYKAAN
----------GAGGTGTGAA-
 C G T A C G A T G A C T G A C T T G A C C T G A A T G C C T G A T A G C A G T C A C G T T C G A C A T G T A C G G A C T A T C G G A C T A C G T C T G A T C G A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G C T G A T A C G T A C G G A C T C T A G G A C T A C T G C T G A C G T A A C G T

Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ANTTMRCASBNNNGTGYKAAN
-TTTCACACCT----------
 C G T A C G A T G A C T G A C T T G A C C T G A A T G C C T G A T A G C A G T C A C G T T C G A C A T G T A C G G A C T A T C G G A C T A C G T C T G A T C G A C G T A
A C G T A C G T G C A T G A C T T A G C C G T A G A T C C G T A T G A C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T