Information for Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer (Motif 289)

T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A
Reverse Opposite:
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C
p-value:1e-1095
log p-value:-2.522e+03
FDR:NA
Information Content per bp:1.722
Number of Target Sequences with motif1064.0
Percentage of Target Sequences with motif32.54%
Number of Background Sequences with motif623.1
Percentage of Background Sequences with motif1.39%
Average Position of motif in Targets49.7 +/- 25.1bp
Average Position of motif in Background50.4 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:SCTGTCAVTCAV
SCTGTCAVTCAV
 T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.99
Offset:0
Orientation:forward strand
Alignment:SCTGTCAVTCAV
NCTGTCAATCAN
 T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

PKNOX1/MA0782.2/Jaspar

Match Rank:3
Score:0.95
Offset:-2
Orientation:reverse strand
Alignment:--SCTGTCAVTCAV-
NNGCTGTCACTCANN
 A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T
G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-SCTGTCAVTCAV
GSCTGTCACTCA-
 A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T

PBX3/MA1114.1/Jaspar

Match Rank:5
Score:0.94
Offset:-3
Orientation:reverse strand
Alignment:---SCTGTCAVTCAV--
NNNCCTGTCACTCANNN
 A C G T A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T
T A G C A G T C T A C G A T G C T G A C G A C T A T C G G A C T A T G C G T C A T G A C G C A T A G T C G C T A T G A C T G A C A T G C

Dux/MA0611.1/Jaspar

Match Rank:6
Score:0.75
Offset:4
Orientation:forward strand
Alignment:SCTGTCAVTCAV
----CCAATCAA
 T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:SCTGTCAVTCAV
NCYATMAATCAY
 T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A
T A C G G A T C G A T C C T G A A G C T G T C A G C T A T C G A C G A T G A T C G C T A G A C T

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:SCTGTCAVTCAV
CCTGTCAA----
 T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T

SIZF2/MA1405.1/Jaspar

Match Rank:9
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:SCTGTCAVTCAV
ACTGTCAGTN--
 T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A
C T G A A T G C C G A T T C A G G C A T A G T C G C T A T A C G G A C T T G A C A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:SCTGTCAVTCAV
GCTGTCAA----
 T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T