Information for Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer (Motif 288)

C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G
Reverse Opposite:
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A
p-value:1e-4430
log p-value:-1.020e+04
FDR:NA
Information Content per bp:1.598
Number of Target Sequences with motif49454.0
Percentage of Target Sequences with motif76.32%
Number of Background Sequences with motif30579.6
Percentage of Background Sequences with motif48.92%
Average Position of motif in Targets98.2 +/- 52.0bp
Average Position of motif in Background100.6 +/- 65.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.78
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TAATCCCN
TAATCCCN
 C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G
C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

PITX3/MA0714.1/Jaspar

Match Rank:2
Score:0.97
Offset:-2
Orientation:forward strand
Alignment:--TAATCCCN
CTTAATCCC-
 A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T

PITX2/MA1547.1/Jaspar

Match Rank:3
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-TAATCCCN
ATAATCCC-
 A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G
G T C A C G A T C T G A C G T A A C G T A G T C A G T C T G A C A C G T

PITX1/MA0682.2/Jaspar

Match Rank:4
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-TAATCCCN
CTAATCCC-
 A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G
G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.96
Offset:-2
Orientation:forward strand
Alignment:--TAATCCCN
NYTAATCCYB
 A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

OTX2/MA0712.2/Jaspar

Match Rank:6
Score:0.95
Offset:-3
Orientation:reverse strand
Alignment:---TAATCCCN-
NNCTAATCCCNN
 A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T
G C A T G C A T G A T C G C A T C G T A G T C A C A G T G A T C G A T C G A T C G C A T C G A T

oc/MA0234.1/Jaspar

Match Rank:7
Score:0.95
Offset:0
Orientation:forward strand
Alignment:TAATCCCN
TAATCC--
 C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G
A C G T C G T A C G T A A C G T A G T C A G T C A C G T A C G T

unc-30/MA1443.1/Jaspar

Match Rank:8
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-TAATCCCN
TTAATCCC-
 A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G
G C A T C G A T C G T A C G T A A C G T G T A C G A T C G A T C A C G T

bcd/MA0212.1/Jaspar

Match Rank:9
Score:0.94
Offset:0
Orientation:forward strand
Alignment:TAATCCCN
TAATCC--
 C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G
A C G T C G T A C G T A A C G T A G T C A G T C A C G T A C G T

bcd/dmmpmm(Papatsenko)/fly

Match Rank:10
Score:0.94
Offset:-2
Orientation:forward strand
Alignment:--TAATCCCN
CCTAATCCC-
 A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G
A T G C G A T C C G A T C T G A C G T A A C G T A G T C A G T C A T G C A C G T