Information for Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer (Motif 285)

G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A
Reverse Opposite:
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T
p-value:1e-1395
log p-value:-3.213e+03
FDR:NA
Information Content per bp:1.743
Number of Target Sequences with motif6385.0
Percentage of Target Sequences with motif18.96%
Number of Background Sequences with motif1770.3
Percentage of Background Sequences with motif6.12%
Average Position of motif in Targets51.9 +/- 23.6bp
Average Position of motif in Background49.6 +/- 39.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:ATGCATAATTCA
ATGCATAATTCA
 G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.92
Offset:0
Orientation:forward strand
Alignment:ATGCATAATTCA---
ATGAATWATTCATGA
 G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T A C G T
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:3
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--ATGCATAATTCA-
WYATGCATWATGCAT
 A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

POU4F1/MA0790.1/Jaspar

Match Rank:4
Score:0.87
Offset:0
Orientation:forward strand
Alignment:ATGCATAATTCA--
ATGAATAATTAATG
 G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T
T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G

POU4F3/MA0791.1/Jaspar

Match Rank:5
Score:0.85
Offset:0
Orientation:forward strand
Alignment:ATGCATAATTCA----
ATGCATAATTAATGAG
 G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T A C G T A C G T
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G

PH0148.1_Pou3f3/Jaspar

Match Rank:6
Score:0.79
Offset:-5
Orientation:forward strand
Alignment:-----ATGCATAATTCA
AAAATATGCATAATAAA
 A C G T A C G T A C G T A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

POU4F2/MA0683.1/Jaspar

Match Rank:7
Score:0.78
Offset:0
Orientation:forward strand
Alignment:ATGCATAATTCA----
ATGCATAATTAATGAG
 G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T A C G T A C G T
C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.77
Offset:0
Orientation:forward strand
Alignment:ATGCATAATTCA
ATGAATATTC--
 G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T

unc-86/MA0926.1/Jaspar

Match Rank:9
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:ATGCATAATTCA
ATGCATAT----
 G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A
C G T A A C G T A C T G G T A C G T C A A C G T C G T A G A C T A C G T A C G T A C G T A C G T

AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:ATGCATAATTCA
----ATAATTCG
 G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A
A C G T A C G T A C G T A C G T C G T A G C A T C G T A G T C A A G C T C A G T G A T C C T A G