Information for BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer (Motif 28)

C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G
Reverse Opposite:
G T A C C T G A A G T C C T A G G C A T A C T G G T C A G A T C
p-value:1e-1374
log p-value:-3.164e+03
FDR:NA
Information Content per bp:1.751
Number of Target Sequences with motif2901.0
Percentage of Target Sequences with motif68.91%
Number of Background Sequences with motif5778.8
Percentage of Background Sequences with motif14.70%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GNCACGTG
GNCACGTG
 C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G
C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:2
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GNCACGTG
GHCACGTG
 C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G
C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:3
Score:0.99
Offset:2
Orientation:reverse strand
Alignment:GNCACGTG--
--CACGTGBN
 C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G A C G T A C G T
A C G T A C G T G T A C C T G A A G T C C T A G G C A T C A T G A C G T G C T A

PHYPADRAFT_72483/MA1011.1/Jaspar

Match Rank:4
Score:0.99
Offset:0
Orientation:forward strand
Alignment:GNCACGTG--
GTCACGTGAC
 C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G A C G T A C G T
T C A G C A G T G T A C C T G A G A T C C T A G G A C T C A T G G T C A A G T C

BIM2/MA0965.1/Jaspar

Match Rank:5
Score:0.98
Offset:0
Orientation:forward strand
Alignment:GNCACGTG--
GGCACGTGCC
 C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G A C G T A C G T
T A C G C A T G G T A C C T G A G A T C C T A G G A C T C A T G G T A C A T G C

BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer

Match Rank:6
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:GNCACGTG----
NNCACGTGNNNN
 C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G A C G T A C G T A C G T A C G T
C T G A C A T G G T A C C G T A G A T C C T A G G C A T A T C G G T C A G A C T G C A T G C A T

Arnt/MA0004.1/Jaspar

Match Rank:7
Score:0.98
Offset:2
Orientation:reverse strand
Alignment:GNCACGTG
--CACGTG
 C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G
A C G T A C G T A G T C C G T A A G T C A C T G A G C T A C T G

MNT/MA0825.1/Jaspar

Match Rank:8
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:GNCACGTG--
NGCACGTGNT
 C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G A C G T A C G T
C T A G A C T G G T A C G T C A A G T C T C A G C G A T C A T G A T C G G A C T

At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer

Match Rank:9
Score:0.98
Offset:-3
Orientation:reverse strand
Alignment:---GNCACGTG----
NNNNNCACGTGNNNN
 A C G T A C G T A C G T C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G A C G T A C G T A C G T A C G T
C G T A C G A T G C A T A G C T T C G A G A T C C G T A G A T C C T A G G C A T C T A G A G T C T C A G C G T A G C T A

At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.98
Offset:-4
Orientation:forward strand
Alignment:----GNCACGTG---
NNNNNNCACGTGNNN
 A C G T A C G T A C G T A C G T C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G A C G T A C G T A C G T
C G A T C G T A C G A T C G A T A G T C C T G A G A T C C T G A G A T C C T A G G C A T C T A G G A C T T C A G G C T A