Information for PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer (Motif 279)

C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C
Reverse Opposite:
T A C G G A T C G A T C C T G A A G C T G T C A G C T A T C G A C G A T G A T C G C T A G A C T
p-value:1e-4304
log p-value:-9.912e+03
FDR:NA
Information Content per bp:1.606
Number of Target Sequences with motif8019.0
Percentage of Target Sequences with motif34.65%
Number of Background Sequences with motif1278.7
Percentage of Background Sequences with motif4.97%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:RTGATTKATRGN
RTGATTKATRGN
 C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C
C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:2
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-RTGATTKATRGN
NNTGATTGATGNN
 A C G T C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C
C G T A C G T A C G A T C A T G C G T A C G A T C A G T C A T G G T C A G A C T C T A G C T G A G A T C

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:3
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--RTGATTKATRGN-
AAATGATTTATGGCT
 A C G T A C G T C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C A C G T
C T G A C G T A C G T A C G A T C T A G C G T A C G A T C G A T C A G T T C G A A G C T C A T G C T A G A G T C G A C T

PBX2/MA1113.2/Jaspar

Match Rank:4
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-RTGATTKATRGN
NNTGATTTATGNN
 A C G T C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C
C G T A C T G A C G A T C T A G C G T A C G A T C G A T C A G T T C G A G A C T C A T G C T G A A G T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:RTGATTKATRGN
-TGATTGATGA-
 C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C
A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:6
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:RTGATTKATRGN-
-TGATTTATGGCC
 C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C A C G T
A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:7
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:RTGATTKATRGN-
-TGATTTATGGCC
 C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C A C G T
A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:8
Score:0.90
Offset:1
Orientation:forward strand
Alignment:RTGATTKATRGN
-TGATKGATGR-
 C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C
A C G T C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:9
Score:0.89
Offset:1
Orientation:forward strand
Alignment:RTGATTKATRGN-
-TGATTRATGGCY
 C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C A C G T
A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer

Match Rank:10
Score:0.89
Offset:0
Orientation:forward strand
Alignment:RTGATTKATRGN
ATGATTRATG--
 C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C
C G T A C G A T C T A G G T C A G A C T C G A T C T A G C G T A A C G T C A T G A C G T A C G T