Information for Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer (Motif 276)

C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A
Reverse Opposite:
C G A T T C G A C G T A A G C T A C G T C T A G C T G A A C G T A G C T G C T A
p-value:1e-20843
log p-value:-4.799e+04
FDR:NA
Information Content per bp:1.873
Number of Target Sequences with motif18309.0
Percentage of Target Sequences with motif36.50%
Number of Background Sequences with motif566.4
Percentage of Background Sequences with motif1.23%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TAATCAATTA
TAATCAATTA
 C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A
C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A

prd/dmmpmm(Papatsenko)/fly

Match Rank:2
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:TAATCAATTA
TAATCAATTA
 C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A
G C A T C G T A C G T A A G C T A G T C C T G A G T C A A C G T A G C T T G C A

PAX7/MA0680.1/Jaspar

Match Rank:3
Score:0.92
Offset:0
Orientation:forward strand
Alignment:TAATCAATTA
TAATCGATTA
 C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A
C G A T T G C A G T C A G A C T A G T C T C A G C G T A C G A T G A C T G C T A

PAX3/MA0780.1/Jaspar

Match Rank:4
Score:0.92
Offset:0
Orientation:forward strand
Alignment:TAATCAATTA
TAATCGATTA
 C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A
C G A T T C G A G T C A A G C T A G T C T C A G C T G A A C G T G A C T G C T A

prd-HD/dmmpmm(Bergman)/fly

Match Rank:5
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--TAATCAATTA--
GNTAATCGATTATC
 A C G T A C G T C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A A C G T A C G T
T A C G G T C A C G A T C T G A C G T A A C G T A G T C C T A G C G T A A C G T A G C T C G T A A C G T T A G C

PH0038.1_Hlx/Jaspar

Match Rank:6
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--TAATCAATTA---
TGTAATTAATTATGG
 A C G T A C G T C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A A C G T A C G T A C G T
C A G T C T A G G A C T G C T A C G T A G A C T G A C T C G T A C T G A G C A T C G A T C T G A C A G T C A T G C A T G

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:7
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--TAATCAATTA
HNRAATCAAT--
 A C G T A C G T C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T

PH0006.1_Barhl2/Jaspar

Match Rank:8
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--TAATCAATTA----
AAAAACCAATTAAGAA
 A C G T A C G T C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A A C G T A C G T A C G T A C G T
G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A

PH0149.1_Pou3f4/Jaspar

Match Rank:9
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---TAATCAATTA----
AATTAATTAATTAATTC
 A C G T A C G T A C G T C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A A C G T A C G T A C G T A C G T
C T G A T G C A G C A T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G C T A C T G A C A G T C G A T A G T C

PH0142.1_Pou1f1/Jaspar

Match Rank:10
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---TAATCAATTA----
GATTAATTAATTAAGTC
 A C G T A C G T A C G T C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A A C G T A C G T A C G T A C G T
C T A G T C G A C G A T C A G T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G C T A C G T A C A T G C G A T A G T C