Information for Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer (Motif 275)

G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C
Reverse Opposite:
C A T G C G A T T C G A C T G A G C A T A G T C C A T G T C A G C T G A A C G T G A C T C G T A
p-value:1e-1470
log p-value:-3.385e+03
FDR:NA
Information Content per bp:1.777
Number of Target Sequences with motif1750.0
Percentage of Target Sequences with motif3.49%
Number of Background Sequences with motif92.2
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TAATCHGATTAC
TAATCHGATTAC
G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C
G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-TAATCHGATTAC
YTAATYNRATTA-
A C G T G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C
G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A A C G T

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:3
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-TAATCHGATTAC
NTAATBNAATTA-
A C G T G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C
G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A A C G T

PHOX2A/MA0713.1/Jaspar

Match Rank:4
Score:0.89
Offset:0
Orientation:forward strand
Alignment:TAATCHGATTAC
TAATTTAATTA-
G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C
G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A A C G T

PROP1/MA0715.1/Jaspar

Match Rank:5
Score:0.88
Offset:0
Orientation:forward strand
Alignment:TAATCHGATTAC
TAATTTAATTA-
G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C
G C A T C G T A C T G A G C A T G A C T C G A T G T C A C T G A C G A T G A C T C G T A A C G T

Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer

Match Rank:6
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:TAATCHGATTAC
TAATTNAATTAA
G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C
A C G T C G T A C G T A A C G T A G C T A C G T C T G A C G T A A C G T A C G T C G T A G C T A

PHOX2B/MA0681.2/Jaspar

Match Rank:7
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--TAATCHGATTAC--
TTTAATCAAATTATAT
A C G T A C G T G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C A C G T A C G T
C G A T G C A T G C A T C G T A C G T A G C A T G A T C G C T A G C T A C G T A C G A T G C A T C G T A C G A T G C T A G C A T

CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer

Match Rank:8
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-TAATCHGATTAC
NAAATTSAATTT-
A C G T G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C
T G A C G C T A C T G A C G T A A G C T A G C T T A G C T C G A C T G A A C G T G A C T C G A T A C G T

PH0126.1_Obox6/Jaspar

Match Rank:9
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---TAATCHGATTAC
CNATAATCCGNTTNT
A C G T A C G T A C G T G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C
T A G C C T G A G C T A C G A T C G T A C G T A A C G T G T A C A G T C A T C G G A C T C G A T G A C T C G A T C A G T

Dmbx1/MA0883.1/Jaspar

Match Rank:10
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----TAATCHGATTAC
NNNATTAATCCGNTTNA
A C G T A C G T A C G T A C G T A C G T G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A