Information for OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer (Motif 258)

G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A
Reverse Opposite:
G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T
p-value:1e-390
log p-value:-8.985e+02
FDR:NA
Information Content per bp:1.721
Number of Target Sequences with motif236.0
Percentage of Target Sequences with motif13.45%
Number of Background Sequences with motif52.5
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets52.8 +/- 14.8bp
Average Position of motif in Background42.4 +/- 38.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:ATGAATWATTCATGA
ATGAATWATTCATGA
 G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.96
Offset:0
Orientation:forward strand
Alignment:ATGAATWATTCATGA
ATGCATWATGCATRW
 G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.92
Offset:0
Orientation:forward strand
Alignment:ATGAATWATTCATGA
ATGCATAATTCA---
 G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T A C G T

POU4F1/MA0790.1/Jaspar

Match Rank:4
Score:0.88
Offset:0
Orientation:forward strand
Alignment:ATGAATWATTCATGA
ATGAATAATTAATG-
 G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A
T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G A C G T

POU4F3/MA0791.1/Jaspar

Match Rank:5
Score:0.87
Offset:0
Orientation:forward strand
Alignment:ATGAATWATTCATGA-
ATGCATAATTAATGAG
 G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A A C G T
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G

POU4F2/MA0683.1/Jaspar

Match Rank:6
Score:0.80
Offset:0
Orientation:forward strand
Alignment:ATGAATWATTCATGA-
ATGCATAATTAATGAG
 G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A A C G T
C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:ATGAATWATTCATGA
---GAATATTCAT--
 G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A
A C G T A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:8
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----ATGAATWATTCATGA
AAAATATGCATAATAAA---
 A C G T A C G T A C G T A C G T A C G T G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A A C G T A C G T A C G T

AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer

Match Rank:9
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:ATGAATWATTCATGA
----ATAATTCG---
 G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A
A C G T A C G T A C G T A C G T C G T A G C A T C G T A G T C A A G C T C A G T G A T C C T A G A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:10
Score:0.64
Offset:5
Orientation:forward strand
Alignment:ATGAATWATTCATGA----
-----ACATTCATGACACG
 G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G