Information for OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer (Motif 256)

G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G
Reverse Opposite:
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T
p-value:
log p-value:-7.184e+03
FDR:0.000
Information Content per bp:1.685
Number of Target Sequences with motif
Percentage of Target Sequences with motif
Number of Background Sequences with motif
Percentage of Background Sequences with motif
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:ATTTGCATAACAATG
ATTTGCATAACAATG
 G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.99
Offset:0
Orientation:reverse strand
Alignment:ATTTGCATAACAATG
ATTTGCATAACAAAG
 G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.83
Offset:0
Orientation:forward strand
Alignment:ATTTGCATAACAATG
ATTTGCATAA-----
 G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T A C G T A C G T A C G T

POU5F1/MA1115.1/Jaspar

Match Rank:4
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-ATTTGCATAACAATG
NATTTGCATNN-----
 A C G T G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G
G T C A C G T A C G A T G A C T C G A T T C A G G A T C C T G A A G C T C G T A G C A T A C G T A C G T A C G T A C G T A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.81
Offset:-4
Orientation:reverse strand
Alignment:----ATTTGCATAACAATG
TNTAATTTGCATACNA---
 A C G T A C G T A C G T A C G T G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---ATTTGCATAACAATG
TTCATTTGCATAT-----
 A C G T A C G T A C G T G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T A C G T A C G T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:7
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:ATTTGCATAACAATG
ATTTGCATA------
 G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G
G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T A C G T A C G T A C G T A C G T A C G T

POU2F3/MA0627.2/Jaspar

Match Rank:8
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--ATTTGCATAACAATG
NNATTTGCATATN----
 A C G T A C G T G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G
C G A T G C A T G C T A G C A T G C A T G C A T T C A G G T A C G T C A G C A T C G T A G C A T C G A T A C G T A C G T A C G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:9
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--ATTTGCATAACAATG
TAATTTGCATAA-----
 A C G T A C G T G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A A C G T A C G T A C G T A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:10
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----ATTTGCATAACAATG
TNTAATTTGCATANNN---
 A C G T A C G T A C G T A C G T G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A A C G T A C G T A C G T