Information for NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer (Motif 245)

C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G
Reverse Opposite:
G T A C C T G A A G T C C T A G G C A T C A T G A C G T G C T A
p-value:1e-196
log p-value:-4.523e+02
FDR:NA
Information Content per bp:1.736
Number of Target Sequences with motif571.0
Percentage of Target Sequences with motif46.80%
Number of Background Sequences with motif5249.9
Percentage of Background Sequences with motif12.05%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:NVCACGTG
NVCACGTG
 C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G
C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G

Arnt/MA0004.1/Jaspar

Match Rank:2
Score:0.99
Offset:2
Orientation:forward strand
Alignment:NVCACGTG
--CACGTG
 C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G
A C G T A C G T G T A C C T G A A G T C A C T G A C G T A C T G

At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer

Match Rank:3
Score:0.99
Offset:-2
Orientation:forward strand
Alignment:--NVCACGTG-----
NNNNCACGTGNNNNN
 A C G T A C G T C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G A C G T A C G T A C G T A C G T A C G T
C G A T G C A T A G T C T C A G G A T C C G T A G A T C C T A G G C A T C T A G A G C T T C G A C G T A G C T A G C A T

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:4
Score:0.99
Offset:2
Orientation:reverse strand
Alignment:NVCACGTG--
--CACGTGNC
 C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G A C G T A C G T
A C G T A C G T G T A C C T G A A G T C C T A G G C A T A C T G G T C A G A T C

MNT/MA0825.1/Jaspar

Match Rank:5
Score:0.99
Offset:0
Orientation:forward strand
Alignment:NVCACGTG--
ACCACGTGCC
 C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G A C G T A C G T
C T G A T A G C G T A C C G T A A G T C C T A G A C G T A C T G T G A C G A T C

PHYPADRAFT_143875/MA0988.1/Jaspar

Match Rank:6
Score:0.98
Offset:0
Orientation:forward strand
Alignment:NVCACGTG--
CGCACGTGCG
 C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G A C G T A C G T
G A T C T A C G G T A C C G T A G A T C C T A G G C A T C A T G A T G C C T A G

At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer

Match Rank:7
Score:0.98
Offset:-1
Orientation:reverse strand
Alignment:-NVCACGTG------
NNNCACGTGNNNNNN
 A C G T C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T A G T C C T G A G A T C C G T A G A T C C T A G G A C T C T A G G A C T T C A G G C T A G C T A G C A T G C T A

MYC3/MA0568.1/Jaspar

Match Rank:8
Score:0.98
Offset:1
Orientation:forward strand
Alignment:NVCACGTG-
-GCACGTGC
 C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G A C G T
A C G T T A C G G T A C C T G A A G T C C T A G G A C T A C T G A T G C

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.98
Offset:2
Orientation:reverse strand
Alignment:NVCACGTG--
--CACGTGDC
 C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G A C G T A C G T
A C G T A C G T G A T C C T G A A G T C C T A G G C A T C T A G C G T A G A T C

Mlxip/MA0622.1/Jaspar

Match Rank:10
Score:0.98
Offset:1
Orientation:reverse strand
Alignment:NVCACGTG-
-ACACGTGC
 C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G A C G T
A C G T G T C A A G T C C G T A A G T C A C T G A C G T A C T G T A G C