Information for Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer (Motif 244)

T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C
Reverse Opposite:
C T A G G T C A C A T G A C G T A T G C T C A G C A G T A C T G G T C A A G T C C G A T A G T C
p-value:1e-460
log p-value:-1.059e+03
FDR:NA
Information Content per bp:1.532
Number of Target Sequences with motif762.0
Percentage of Target Sequences with motif42.26%
Number of Background Sequences with motif2258.6
Percentage of Background Sequences with motif5.39%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:NHRTCACGACDN
NHRTCACGACDN
T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C
T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C

BIM1/MA0964.1/Jaspar

Match Rank:2
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:NHRTCACGACDN
-NNNCACGTGN-
T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C
A C G T A C T G T C A G C A G T G T A C C T G A A G T C C T A G G A C T C A T G T A G C A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:3
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:NHRTCACGACDN
---GCACGTNC-
T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C
A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.76
Offset:1
Orientation:forward strand
Alignment:NHRTCACGACDN
-TBGCACGCAA-
T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:5
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:NHRTCACGACDN
---GCACGTAY-
T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C
A C G T A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:6
Score:0.75
Offset:4
Orientation:reverse strand
Alignment:NHRTCACGACDN
----CACGCA--
T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C
A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T

HNRNPL(RRM)/Homo_sapiens-RNCMPT00091-PBM/HughesRNA

Match Rank:7
Score:0.74
Offset:3
Orientation:forward strand
Alignment:NHRTCACGACDN
---ACACAAN--
T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C
A C G T A C G T A C G T C G T A A G T C C G T A G T A C T C G A T C G A T C G A A C G T A C G T

prd/dmmpmm(Noyes)/fly

Match Rank:8
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---NHRTCACGACDN
AATCCGTCACGCT--
A C G T A C G T A C G T T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C
T G C A G C T A A G C T A G T C T G A C A C T G C G A T A G T C G T C A A G T C C T A G A T G C G A C T A C G T A C G T

CG33714(RRM)/Drosophila_melanogaster-RNCMPT00009-PBM/HughesRNA

Match Rank:9
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:NHRTCACGACDN
----CACGCCN-
T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C
A C G T A C G T A C G T A C G T A G T C C T G A A G T C A C T G A G T C T A G C T A G C A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:10
Score:0.73
Offset:3
Orientation:forward strand
Alignment:NHRTCACGACDN-
---GCACGTACCC
T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C A C G T
A C G T A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C