Information for RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer (Motif 243)


Reverse Opposite:

p-value:0.000e+00
log p-value:-5.041e+03
Information Content per bp:1.687
Total Number of Sequences:49999.6
Total Number of Target Sequences:1625.0
Total Instances of Motif:1852.4
Total Instances of Motif in Targets:1701.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:CGGTTGCCATGGCAAC
CGGTTGCCATGGCAAC

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:2
Score:0.99
Offset:1
Orientation:reverse strand
Alignment:CGGTTGCCATGGCAAC
-KGTTGCCATGGCAAC

RFX2/MA0600.2/Jaspar

Match Rank:3
Score:0.96
Offset:1
Orientation:forward strand
Alignment:CGGTTGCCATGGCAAC-
-CGTTGCCATGGCAACG

RFX3/MA0798.1/Jaspar

Match Rank:4
Score:0.96
Offset:1
Orientation:reverse strand
Alignment:CGGTTGCCATGGCAAC-
-CGTTGCCATGGCAACN

RFX5/MA0510.2/Jaspar

Match Rank:5
Score:0.96
Offset:1
Orientation:reverse strand
Alignment:CGGTTGCCATGGCAAC-
-NGTTGCCATGGCAACG

RFX1(MacIsaac)/Yeast

Match Rank:6
Score:0.96
Offset:2
Orientation:reverse strand
Alignment:CGGTTGCCATGGCAAC
--GTTGCCATGGCAAC

Rfx1/MA0509.1/Jaspar

Match Rank:7
Score:0.94
Offset:2
Orientation:reverse strand
Alignment:CGGTTGCCATGGCAAC
--GTTGCCATGGNAAC

RFX4/MA0799.1/Jaspar

Match Rank:8
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:CGGTTGCCATGGCAAC-
-CGTTGCCATGGCAACN

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.94
Offset:1
Orientation:forward strand
Alignment:CGGTTGCCATGGCAAC
-NGTTGCCATGGCAA-

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.93
Offset:1
Orientation:forward strand
Alignment:CGGTTGCCATGGCAAC
-GGTTGCCATGGCAA-