Information for Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer (Motif 238)

A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C
Reverse Opposite:
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G
p-value:1e-406
log p-value:-9.349e+02
FDR:NA
Information Content per bp:1.607
Number of Target Sequences with motif1694.0
Percentage of Target Sequences with motif31.73%
Number of Background Sequences with motif4296.4
Percentage of Background Sequences with motif10.14%
Average Position of motif in Targets50.6 +/- 23.8bp
Average Position of motif in Background50.0 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:BTBRAGTGSN
BTBRAGTGSN
 A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:BTBRAGTGSN
CTYRAGTGSY
 A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.97
Offset:1
Orientation:reverse strand
Alignment:BTBRAGTGSN-
-TTGAGTGSTT
 A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T
A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

NKX2-8/MA0673.1/Jaspar

Match Rank:4
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:BTBRAGTGSN
NTCAAGTGG-
 A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.92
Offset:1
Orientation:forward strand
Alignment:BTBRAGTGSN-
-TTRAGTGSYK
 A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T
A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

tin/MA0247.2/Jaspar

Match Rank:6
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-BTBRAGTGSN
TTTCAAGTGG-
 A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C
C G A T A G C T A G C T A G T C C T G A C G T A A C T G A C G T A C T G A T C G A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:BTBRAGTGSN
NTCAAGTGGN
 A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

NKX2-5/MA0063.2/Jaspar

Match Rank:8
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-BTBRAGTGSN
NNTTGAGTGNN
 A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C
C G A T A G C T C G A T G C A T C T A G C G T A C T A G G A C T C T A G A C T G A G C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:BTBRAGTGSN-
CTTGAGTGGCT
 A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

NKX2-2/MA1645.1/Jaspar

Match Rank:10
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--BTBRAGTGSN--
NNNTTGAGTGGNNN
 A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T
C G A T C G A T A G T C A G C T C A G T T A C G C G T A C A T G C G A T C T A G A C T G G C A T C G A T C T G A